SRR2934412.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934412.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	689527
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTGTTCGCATCGTATGCCGTCTTCTGCT	4139	0.6002665595400906	No Hit
CCTGTCTCTTATACACATCTGACGCTGTTCGCATCGTATGCCGTCTTCTGC	3869	0.5611092821600895	No Hit
TCTGTCTCTTATACACATCTGACGCTGTTCGCATCGTATGCCGTCTTCTGC	3097	0.4491484742439382	No Hit
GCTGTCTCTTATACACATCTGACGCTGTTCGCATCGTATGCCGTCTTCTGC	2943	0.42681432344201176	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1988	0.28831358307941535	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTTCGCATCGTATGCC	1386	0.20100735721733884	No Hit
TCCTGTCTCTTATACACATCTGACGCTGTTCGCATCGTATGCCGTCTTCTG	1238	0.17954336813496788	No Hit
TTTTTGGGAAACTTCTCATTTTACTGCCACATTAGCATTTTATCAGTAAAA	1015	0.14720235755815217	No Hit
CGCTGTCTCTTATACACATCTGACGCTGTTCGCATCGTATGCCGTCTTCTG	958	0.1389358212223742	No Hit
GCCTGTCTCTTATACACATCTGACGCTGTTCGCATCGTATGCCGTCTTCTG	937	0.13589025520392967	No Hit
TTCCTGTCTCTTATACACATCTGACGCTGTTCGCATCGTATGCCGTCTTCT	779	0.11297599658896605	No Hit
CTACACAAAAATAAATAAAGGTAAAAACTCTCATACGCGCATGTCATCGGG	749	0.10862518799118816	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGGGTC	60	0.0	45.000004	5
TACTTCG	35	1.210974E-7	45.000004	1
TTATGCG	30	2.1642336E-6	45.000004	1
ACGATGG	25	3.8891754E-5	45.000004	10
GCCGATA	25	3.8891754E-5	45.000004	9
GAGCGTA	35	1.210974E-7	45.000004	32
GTCGTGA	30	2.1642336E-6	45.000004	22
CGTACAA	70	0.0	45.000004	26
ATCGGGA	30	2.1642336E-6	45.000004	4
TATCGCG	25	3.8891754E-5	45.000004	1
AGTGTCG	30	2.1642336E-6	45.000004	19
GCTTTCG	70	0.0	45.000004	1
AACCGGT	20	7.031322E-4	45.0	36
GTCGATT	20	7.031322E-4	45.0	26
CGCGGAC	20	7.031322E-4	45.0	4
CGACGCC	20	7.031322E-4	45.0	45
ACCGAAT	20	7.031322E-4	45.0	25
CGACCAA	20	7.031322E-4	45.0	29
TACGGGT	20	7.031322E-4	45.0	4
CTAACGT	20	7.031322E-4	45.0	19