##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934412.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 689527 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.10451222359676 33.0 31.0 34.0 30.0 34.0 2 32.30166621466599 34.0 31.0 34.0 30.0 34.0 3 32.359059181148815 34.0 31.0 34.0 30.0 34.0 4 35.896336184079814 37.0 35.0 37.0 35.0 37.0 5 35.87083319434917 37.0 35.0 37.0 35.0 37.0 6 35.56924239369887 37.0 35.0 37.0 33.0 37.0 7 35.90925663534568 37.0 35.0 37.0 35.0 37.0 8 35.999374933831454 37.0 35.0 37.0 35.0 37.0 9 37.7648561985245 39.0 38.0 39.0 35.0 39.0 10 37.182214764614 39.0 37.0 39.0 34.0 39.0 11 37.041180403377965 39.0 37.0 39.0 33.0 39.0 12 36.935181653510305 39.0 37.0 39.0 33.0 39.0 13 36.87399768246929 39.0 37.0 39.0 33.0 39.0 14 37.96067304108468 40.0 37.0 41.0 33.0 41.0 15 37.98102032262696 40.0 37.0 41.0 33.0 41.0 16 38.01920881995919 40.0 37.0 41.0 33.0 41.0 17 37.982881018437276 40.0 37.0 41.0 33.0 41.0 18 37.94228072287235 39.0 37.0 41.0 33.0 41.0 19 37.96769234562243 40.0 37.0 41.0 33.0 41.0 20 37.91198169179742 39.0 36.0 41.0 33.0 41.0 21 37.75693627660701 39.0 36.0 41.0 33.0 41.0 22 37.82798208046965 39.0 36.0 41.0 33.0 41.0 23 37.743637304993136 39.0 36.0 41.0 33.0 41.0 24 37.69619608804296 39.0 36.0 41.0 33.0 41.0 25 37.65552762981 39.0 36.0 41.0 33.0 41.0 26 37.61029372308844 39.0 36.0 41.0 33.0 41.0 27 37.55882510764626 39.0 36.0 41.0 33.0 41.0 28 37.46830508449995 39.0 36.0 41.0 33.0 41.0 29 37.424266199873244 39.0 36.0 41.0 33.0 41.0 30 37.38227799636562 39.0 36.0 41.0 32.0 41.0 31 37.32389159525298 39.0 36.0 41.0 32.0 41.0 32 37.20273317796112 39.0 35.0 41.0 32.0 41.0 33 37.12573691820625 39.0 35.0 41.0 32.0 41.0 34 37.00902212676226 39.0 35.0 41.0 31.0 41.0 35 36.94939284466018 39.0 35.0 41.0 31.0 41.0 36 36.77996655678458 39.0 35.0 40.0 31.0 41.0 37 36.706977391748254 39.0 35.0 40.0 31.0 41.0 38 36.63453207778666 39.0 35.0 40.0 31.0 41.0 39 36.559477728935924 39.0 35.0 40.0 30.0 41.0 40 36.498457638352086 39.0 35.0 40.0 30.0 41.0 41 36.45467690170218 39.0 35.0 40.0 30.0 41.0 42 36.3440184358263 39.0 35.0 40.0 30.0 41.0 43 36.26229864820377 39.0 35.0 40.0 30.0 41.0 44 36.14437143143053 38.0 35.0 40.0 30.0 41.0 45 36.18926017400334 38.0 35.0 40.0 30.0 41.0 46 36.08396480485899 38.0 35.0 40.0 30.0 41.0 47 35.84659048884235 38.0 35.0 40.0 29.0 41.0 48 35.75327434603721 38.0 35.0 40.0 28.0 41.0 49 35.76860079445765 38.0 35.0 40.0 28.0 41.0 50 35.65686477831905 38.0 34.0 40.0 28.0 41.0 51 34.66725450925055 37.0 33.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 4.0 10 10.0 11 5.0 12 7.0 13 9.0 14 8.0 15 10.0 16 21.0 17 49.0 18 92.0 19 182.0 20 316.0 21 607.0 22 959.0 23 1545.0 24 2327.0 25 3689.0 26 5196.0 27 6254.0 28 7466.0 29 9082.0 30 11536.0 31 14874.0 32 19791.0 33 27749.0 34 44618.0 35 55826.0 36 63768.0 37 93167.0 38 156959.0 39 163370.0 40 31.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 21.65832519973837 4.166624367138633 60.50161922593313 13.673431207189857 2 19.799949820674172 3.8519158785660315 54.75811679600654 21.59001750475326 3 18.704996323566736 4.004339206441517 55.13214130846218 22.15852316152957 4 18.24134515399687 4.083233869014556 53.413571912339904 24.261849064648665 5 16.78701486671298 4.7494876922876115 54.59467141968335 23.86882602131606 6 20.241846947255144 5.406459790552074 55.64959747769122 18.702095784501548 7 82.90117718377961 1.6815875230411572 10.491974933541398 4.925260359637839 8 85.51224245025938 1.7889074684530122 7.718189425504731 4.980660655782877 9 79.65300851163188 5.46229516755689 9.966542281883088 4.918154038928135 10 37.0229157088845 36.58623955262085 14.57201820958425 11.818826528910398 11 23.769482558333465 25.83640669618449 30.763552406214696 19.630558339267353 12 22.279330613594535 22.79664175587033 34.59429434960487 20.329733280930263 13 22.502382067707284 24.578732957520156 34.81618558809155 18.102699386681014 14 19.688859174477578 26.49685944132717 33.389990529739954 20.4242908544553 15 16.62516478687564 25.5415669002084 36.87542329741982 20.95784501549613 16 19.098019366899337 26.5466036862951 32.87920560036083 21.476171346444737 17 20.191232540567665 25.654832950703888 30.620845884207583 23.533088624520868 18 21.007879314370577 24.632828011085863 33.15867253929143 21.200620135252137 19 21.177415822730655 26.10934742221842 32.14986505241999 20.563371702630935 20 23.216349758602636 27.585286725537937 30.308747880793646 18.889615635065777 21 22.655240476442547 28.00847537514847 30.97065089546892 18.365633252940057 22 22.462064574701206 25.26877120112773 30.067423030570232 22.201741193600828 23 20.4994148162436 27.081318062962 28.84789138061309 23.571375740181313 24 21.122740661351912 26.235375844600718 29.501817912859106 23.140065581188264 25 19.22375773537512 28.440220615001298 28.299109389480037 24.03691226014355 26 18.616529882078584 29.145051607841317 29.15027257815865 23.088145931921446 27 19.813437327327286 27.68695061977268 31.469688641634047 21.029923411265983 28 16.263612592400296 26.155901074214643 34.13876468941753 23.44172164396753 29 18.041788066312122 24.267940196685554 33.72833841169381 23.96193332530851 30 21.7002379892303 25.685143583935073 30.352110939818168 22.26250748701646 31 22.594329156073655 27.601964825162757 27.91246753209084 21.891238486672748 32 20.47795082716123 28.08519463342262 27.92058904147336 23.516265497942793 33 21.81567944402467 27.203285730653043 27.453167171118753 23.527867654203533 34 20.18630162415685 25.347085755887733 30.041028125077045 24.425584494878372 35 18.73559701070444 25.139552185773727 30.617075183422838 25.507775620098993 36 21.81190874323993 26.23233027858227 30.026815483657636 21.928945494520157 37 20.99743737373591 26.73122299779414 31.525669045592124 20.74567058287783 38 18.257153091902133 27.04810689066563 31.118143306933593 23.576596710498645 39 20.06012817482129 25.860046089565746 30.15646957987142 23.923356155741544 40 22.634356595173212 24.462856421866004 27.587317102883567 25.315469880077213 41 20.67417229492101 25.616110754183662 26.372426315430726 27.3372906354646 42 20.35366272821804 26.815338630684515 27.303789409261714 25.527209231835734 43 20.608185031188047 25.803485577794632 30.1718424369169 23.416486954100417 44 19.651587247489946 24.03488188279792 30.069888488775636 26.2436423809365 45 21.48110226285555 23.034776013122038 28.874141259153014 26.6099804648694 46 22.98358149862152 23.29451928640938 30.235364242444458 23.486534972524645 47 19.071624461406152 24.990464477823203 32.05675774842754 23.8811533123431 48 18.640024248506585 24.380916193274523 32.260375590803555 24.718683967415345 49 21.723007220892 22.38955109807158 32.1327518719354 23.75468980910102 50 21.358699514304732 21.657600064972073 29.4868801366734 27.49682028404979 51 19.808651437869727 22.075277690358753 27.236206849042894 30.879864022728626 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 215.0 1 376.5 2 538.0 3 1849.0 4 3160.0 5 2117.0 6 1074.0 7 1252.0 8 1430.0 9 1705.5 10 1981.0 11 2245.0 12 2509.0 13 2769.0 14 3029.0 15 2941.5 16 2854.0 17 2779.5 18 2705.0 19 2736.0 20 2767.0 21 2797.5 22 2828.0 23 3166.5 24 3505.0 25 3934.5 26 5150.5 27 5937.0 28 7432.0 29 8927.0 30 10429.0 31 11931.0 32 13376.5 33 14822.0 34 16499.0 35 18176.0 36 20323.5 37 22471.0 38 24817.5 39 27164.0 40 30784.5 41 34405.0 42 40489.0 43 46573.0 44 51908.5 45 57244.0 46 66159.5 47 75075.0 48 83787.0 49 92499.0 50 87346.5 51 82194.0 52 66710.0 53 51226.0 54 41863.5 55 32501.0 56 28100.5 57 23700.0 58 20125.0 59 16550.0 60 15221.5 61 13893.0 62 11450.0 63 9007.0 64 7083.5 65 5160.0 66 3942.0 67 2724.0 68 2288.5 69 1853.0 70 1436.0 71 1019.0 72 884.0 73 749.0 74 561.5 75 256.0 76 138.0 77 141.5 78 145.0 79 87.0 80 29.0 81 30.5 82 32.0 83 32.0 84 32.0 85 21.0 86 10.0 87 7.5 88 5.0 89 4.0 90 3.0 91 1.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 689527.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.87588290185605 #Duplication Level Percentage of deduplicated Percentage of total 1 70.02057128651859 24.420292449096866 2 12.85879387141671 8.96923578637267 3 5.315133235998477 5.561098930393383 4 2.7119564038682835 3.783274959049955 5 1.571119019861415 2.739708148078278 6 1.067318399930792 2.2334202920989603 7 0.7133893945847002 1.741605949227339 8 0.5804640781335513 1.6195357774175645 9 0.3980857147633487 1.2495231695689395 >10 4.423114742572333 33.5132711400688 >50 0.25849112037042876 5.808470750335983 >100 0.07528867567508336 4.742558446750239 >500 0.0029278929429199085 0.7479036989476939 >1k 0.0033461633633370385 2.8701005025933055 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCTGTTCGCATCGTATGCCGTCTTCTGCT 4139 0.6002665595400906 No Hit CCTGTCTCTTATACACATCTGACGCTGTTCGCATCGTATGCCGTCTTCTGC 3869 0.5611092821600895 No Hit TCTGTCTCTTATACACATCTGACGCTGTTCGCATCGTATGCCGTCTTCTGC 3097 0.4491484742439382 No Hit GCTGTCTCTTATACACATCTGACGCTGTTCGCATCGTATGCCGTCTTCTGC 2943 0.42681432344201176 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1988 0.28831358307941535 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTTCGCATCGTATGCC 1386 0.20100735721733884 No Hit TCCTGTCTCTTATACACATCTGACGCTGTTCGCATCGTATGCCGTCTTCTG 1238 0.17954336813496788 No Hit TTTTTGGGAAACTTCTCATTTTACTGCCACATTAGCATTTTATCAGTAAAA 1015 0.14720235755815217 No Hit CGCTGTCTCTTATACACATCTGACGCTGTTCGCATCGTATGCCGTCTTCTG 958 0.1389358212223742 No Hit GCCTGTCTCTTATACACATCTGACGCTGTTCGCATCGTATGCCGTCTTCTG 937 0.13589025520392967 No Hit TTCCTGTCTCTTATACACATCTGACGCTGTTCGCATCGTATGCCGTCTTCT 779 0.11297599658896605 No Hit CTACACAAAAATAAATAAAGGTAAAAACTCTCATACGCGCATGTCATCGGG 749 0.10862518799118816 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.801078130370529E-4 0.0 0.0 0.6455149689569807 0.0 2 5.801078130370529E-4 0.0 0.0 2.2258736786231723 0.0 3 5.801078130370529E-4 0.0 0.0 3.1014013954493445 0.0 4 5.801078130370529E-4 0.0 0.0 4.036535190065074 0.0 5 5.801078130370529E-4 0.0 0.0 5.544235396148374 0.0 6 5.801078130370529E-4 0.0 0.0 6.443402506355806 0.0 7 5.801078130370529E-4 0.0 0.0 7.324151193499312 0.0 8 5.801078130370529E-4 0.0 0.0 8.827210537078315 0.0 9 5.801078130370529E-4 0.0 0.0 9.584686313951448 0.0 10 5.801078130370529E-4 0.0 0.0 11.064831398915489 0.0 11 5.801078130370529E-4 0.0 0.0 14.257019667105132 0.0 12 5.801078130370529E-4 0.0 0.0 16.972359312978316 0.0 13 5.801078130370529E-4 0.0 0.0 17.814675857508117 0.0 14 5.801078130370529E-4 0.0 0.0 18.07224372649657 0.0 15 5.801078130370529E-4 0.0 0.0 18.43452105573821 0.0 16 5.801078130370529E-4 0.0 0.0 19.340794486655344 0.0 17 5.801078130370529E-4 0.0 0.0 20.833121835693163 0.0 18 5.801078130370529E-4 0.0 0.0 22.401298281285577 0.0 19 5.801078130370529E-4 0.0 0.0 23.549766724145684 0.0 20 5.801078130370529E-4 0.0 0.0 24.68764819941786 0.0 21 5.801078130370529E-4 0.0 0.0 26.242047084450647 0.0 22 5.801078130370529E-4 0.0 0.0 27.8139942308278 0.0 23 5.801078130370529E-4 0.0 0.0 29.258027604430282 0.0 24 7.251347662963162E-4 0.0 0.0 30.36545341951802 0.0 25 7.251347662963162E-4 0.0 0.0 31.27636771293945 0.0 26 7.251347662963162E-4 0.0 0.0 32.137827815299474 0.0 27 7.251347662963162E-4 0.0 0.0 33.01060002001372 0.0 28 7.251347662963162E-4 0.0 0.0 33.856542238375 0.0 29 7.251347662963162E-4 0.0 0.0 34.76513610054429 0.0 30 8.701617195555794E-4 0.0 0.0 35.80135368158172 0.0 31 8.701617195555794E-4 0.0 0.0 36.72938115548775 0.0 32 8.701617195555794E-4 0.0 0.0 37.5497986300754 0.0 33 8.701617195555794E-4 0.0 0.0 38.39487068671713 0.0 34 8.701617195555794E-4 0.0 0.0 39.24530874062945 0.0 35 8.701617195555794E-4 0.0 0.0 40.14940676724769 0.0 36 8.701617195555794E-4 0.0 0.0 40.9831667215352 0.0 37 8.701617195555794E-4 0.0 0.0 41.79372236330122 0.0 38 8.701617195555794E-4 0.0 0.0 42.64416041721354 0.0 39 8.701617195555794E-4 0.0 0.0 43.515482352395196 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGGGTC 60 0.0 45.000004 5 TACTTCG 35 1.210974E-7 45.000004 1 TTATGCG 30 2.1642336E-6 45.000004 1 ACGATGG 25 3.8891754E-5 45.000004 10 GCCGATA 25 3.8891754E-5 45.000004 9 GAGCGTA 35 1.210974E-7 45.000004 32 GTCGTGA 30 2.1642336E-6 45.000004 22 CGTACAA 70 0.0 45.000004 26 ATCGGGA 30 2.1642336E-6 45.000004 4 TATCGCG 25 3.8891754E-5 45.000004 1 AGTGTCG 30 2.1642336E-6 45.000004 19 GCTTTCG 70 0.0 45.000004 1 AACCGGT 20 7.031322E-4 45.0 36 GTCGATT 20 7.031322E-4 45.0 26 CGCGGAC 20 7.031322E-4 45.0 4 CGACGCC 20 7.031322E-4 45.0 45 ACCGAAT 20 7.031322E-4 45.0 25 CGACCAA 20 7.031322E-4 45.0 29 TACGGGT 20 7.031322E-4 45.0 4 CTAACGT 20 7.031322E-4 45.0 19 >>END_MODULE