##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934411.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 191445 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.04917861526809 33.0 31.0 34.0 30.0 34.0 2 32.27408394055734 34.0 31.0 34.0 30.0 34.0 3 32.24724594531067 33.0 31.0 34.0 30.0 34.0 4 35.84396040638303 37.0 35.0 37.0 35.0 37.0 5 35.85086056047429 37.0 35.0 37.0 35.0 37.0 6 35.57106740839406 37.0 35.0 37.0 33.0 37.0 7 35.87326386168351 37.0 35.0 37.0 35.0 37.0 8 35.967431899501165 37.0 35.0 37.0 35.0 37.0 9 37.741758729661264 39.0 38.0 39.0 35.0 39.0 10 37.2282274282431 39.0 37.0 39.0 34.0 39.0 11 37.13122829010943 39.0 37.0 39.0 33.0 39.0 12 37.07479432735251 39.0 37.0 39.0 33.0 39.0 13 37.062608059756066 39.0 37.0 39.0 33.0 39.0 14 38.14499203426572 40.0 38.0 41.0 33.0 41.0 15 38.17352764501554 40.0 38.0 41.0 33.0 41.0 16 38.211804957037266 40.0 38.0 41.0 33.0 41.0 17 38.17125545195748 40.0 37.0 41.0 33.0 41.0 18 38.046906422210036 39.0 37.0 41.0 33.0 41.0 19 37.935182428373686 39.0 37.0 41.0 34.0 41.0 20 37.76396876387474 39.0 36.0 41.0 33.0 41.0 21 37.611078899945156 39.0 35.0 41.0 33.0 41.0 22 37.70151218365588 39.0 35.0 41.0 33.0 41.0 23 37.63210843845491 39.0 35.0 41.0 33.0 41.0 24 37.53521376896759 39.0 35.0 41.0 33.0 41.0 25 37.44805035388754 39.0 35.0 41.0 33.0 41.0 26 37.36106453550628 39.0 35.0 41.0 33.0 41.0 27 37.25884196505524 39.0 35.0 41.0 33.0 41.0 28 37.12872104259709 39.0 35.0 41.0 32.0 41.0 29 36.979367442346366 39.0 35.0 41.0 32.0 41.0 30 36.859881428086396 39.0 35.0 40.0 31.0 41.0 31 36.713327587557785 39.0 35.0 40.0 31.0 41.0 32 36.39759199770169 39.0 35.0 40.0 30.0 41.0 33 36.1080414740526 39.0 35.0 40.0 30.0 41.0 34 35.777361644336494 39.0 35.0 40.0 27.0 41.0 35 35.56105408864165 39.0 35.0 40.0 25.0 41.0 36 35.30562824832197 38.0 35.0 40.0 25.0 41.0 37 35.274115281151246 38.0 35.0 40.0 24.0 41.0 38 35.2101909164512 38.0 35.0 40.0 24.0 41.0 39 35.06196035414871 38.0 35.0 40.0 23.0 41.0 40 34.896387996552534 38.0 34.0 40.0 23.0 41.0 41 34.80163493431534 38.0 34.0 40.0 23.0 41.0 42 34.76391130611925 38.0 34.0 40.0 22.0 41.0 43 34.67538457520437 38.0 34.0 40.0 22.0 41.0 44 34.50400376087127 38.0 34.0 40.0 22.0 41.0 45 34.46291624226279 38.0 33.0 40.0 22.0 41.0 46 34.28665674214526 38.0 33.0 40.0 21.0 41.0 47 34.05401551359398 37.0 33.0 40.0 20.0 41.0 48 33.93255504191804 37.0 33.0 40.0 20.0 41.0 49 33.91220454960955 37.0 33.0 40.0 20.0 41.0 50 33.76132048368983 37.0 33.0 40.0 20.0 41.0 51 32.918206273342214 36.0 31.0 39.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 6.0 10 12.0 11 5.0 12 5.0 13 11.0 14 4.0 15 8.0 16 11.0 17 32.0 18 64.0 19 110.0 20 218.0 21 375.0 22 607.0 23 893.0 24 1438.0 25 2552.0 26 3598.0 27 3667.0 28 3706.0 29 3445.0 30 3872.0 31 4580.0 32 5661.0 33 7500.0 34 11119.0 35 13772.0 36 17564.0 37 25240.0 38 40203.0 39 41153.0 40 13.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.914100655540757 4.521925357152185 55.68074381676199 18.883230170545065 2 26.609208911175536 3.9102614327874847 49.589699391470134 19.890830264566848 3 17.517824962783042 3.890412389981457 57.333437801979684 21.258324845255817 4 16.271514011857192 3.9290657891300373 56.133093055446736 23.666327143566036 5 15.73976860194834 4.887043276136749 56.26002246075896 23.113165661155946 6 19.157460367207293 5.344615947138865 58.561989083026454 16.935934602627388 7 75.05811068453082 1.433309827887905 18.416255321371676 5.092324166209616 8 77.00383922275327 1.6986601896105928 15.588289064744442 5.7092115228916915 9 71.65243281360182 4.5443861161169 18.01666274909243 5.786518321188853 10 32.1152289169213 27.99811956436574 24.98002037138604 14.906631147326909 11 20.82269058998668 25.161795816030715 34.63971375590901 19.375799838073597 12 19.295358980386013 20.963200919324088 40.32124108751861 19.420199012771292 13 21.028493823291285 22.363603123612528 39.07022904750711 17.537674005589075 14 17.74295489566194 24.855180339000757 38.499307895217946 18.902556870119355 15 15.394499725769803 26.630624983676775 39.03575439421243 18.939120896340985 16 18.108072814646505 26.062315547546294 35.260779858444984 20.568831779362217 17 18.11747499281778 26.50474026482802 33.584580427799104 21.793204314555094 18 18.6988430097417 25.24275901695004 35.665073519809866 20.393324453498394 19 19.08903340384967 28.270260388101022 34.09229804904803 18.54840815900128 20 19.612421322050718 28.680299825015016 34.131996134660085 17.575282718274178 21 19.916425082921986 27.842983624539684 34.98132622946538 17.259265063072945 22 18.179111494162814 26.12708610828175 34.04685418788686 21.646948209668572 23 18.161351824283738 27.108046697484916 33.09357778996579 21.637023688265558 24 18.90986967536368 28.080649794980282 32.00292512209773 21.006555407558306 25 18.15038261641725 29.276815795659328 30.490219122985714 22.082582464937712 26 17.601922223092796 30.906004335448824 31.014129384418503 20.47794405703988 27 17.655723575961765 29.656036981900808 32.35602914675233 20.332210295385096 28 16.806915824388206 29.182271670714826 31.653477500065293 22.357335004831675 29 18.028154300190653 30.201363315834833 30.775940870746165 20.99454151322834 30 18.99866802475907 29.565149259578472 31.082034004544383 20.354148711118075 31 19.10627073049701 30.32254694559795 29.99973882838413 20.571443495520906 32 19.60824257619682 30.354409882733947 29.186450416568725 20.85089712450051 33 19.226409673796653 28.974379064483273 30.522604403353444 21.276606858366634 34 18.207840371908382 28.69283606257672 31.067408394055736 22.031915171459165 35 18.810624461333543 30.15069602235629 28.2963775496879 22.742301966622268 36 19.24207997074878 31.446107237065473 28.399279166340204 20.91253362584554 37 18.38909347332132 30.804669748491737 29.10600955888114 21.700227219305805 38 20.585024419546084 29.831544307764634 28.032071874428688 21.551359398260598 39 20.09349943848103 27.47107524354253 31.071587139909635 21.363838178066807 40 20.468019535636866 28.64478048525686 31.059050902347934 19.82814907675834 41 18.34835070124579 30.180469586565334 28.58941210269268 22.8817676094962 42 19.283867429287785 30.540886416464257 27.191621614562926 22.983624539685028 43 19.137611324401263 29.826320875447255 27.658074120504583 23.377993679646895 44 18.944866671890097 29.160333254981847 27.272584815482254 24.6222152576458 45 20.46540781947818 28.38987698816893 27.219305805845025 23.925409386507873 46 19.58421478753689 29.673274308548148 29.633053879704352 21.10945702421061 47 17.17830186215362 30.71691608555982 30.644832719580034 21.459949332706522 48 17.765415654626654 29.839379456240696 29.529107576588576 22.866097312544074 49 19.078586539214918 28.104155240408474 30.18099192979707 22.63626629057954 50 18.396406278565646 27.542636266290582 29.051163519548695 25.00979393559508 51 17.493797174123117 28.095797748700672 27.86492204027266 26.54548303690355 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 22.0 1 65.0 2 108.0 3 1923.0 4 3738.0 5 2552.0 6 1366.0 7 1393.5 8 1421.0 9 1617.5 10 1814.0 11 1925.5 12 2037.0 13 2131.0 14 2225.0 15 2283.0 16 2341.0 17 2277.5 18 2214.0 19 2227.0 20 2240.0 21 2247.5 22 2255.0 23 2321.0 24 2387.0 25 2476.5 26 2698.5 27 2831.0 28 3008.5 29 3186.0 30 3359.5 31 3533.0 32 3922.0 33 4311.0 34 4795.0 35 5279.0 36 5710.0 37 6141.0 38 6585.0 39 7029.0 40 7899.0 41 8769.0 42 9863.0 43 10957.0 44 12470.0 45 13983.0 46 16507.0 47 19031.0 48 20735.5 49 22440.0 50 20243.0 51 18046.0 52 14566.0 53 11086.0 54 9339.0 55 7592.0 56 6870.0 57 6148.0 58 5436.0 59 4724.0 60 3978.5 61 3233.0 62 2820.0 63 2407.0 64 2040.0 65 1673.0 66 1300.0 67 927.0 68 753.0 69 579.0 70 460.0 71 341.0 72 288.0 73 235.0 74 173.5 75 94.0 76 76.0 77 50.5 78 25.0 79 17.0 80 9.0 81 7.0 82 5.0 83 3.0 84 1.0 85 1.0 86 1.0 87 1.0 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 191445.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 59.33665351294491 #Duplication Level Percentage of deduplicated Percentage of total 1 76.6523948130479 45.4829659195928 2 12.91959366117616 15.332109052024986 3 4.9540982426699545 8.818788326831891 4 2.291740456875201 5.439368377248076 5 1.1110593221735308 3.2963271016069116 6 0.5781654249734117 2.0583840896887127 7 0.3724982167875088 1.5471958336597176 8 0.19965542086568042 0.9477507623910457 9 0.16488890007930632 0.8805559978922757 >10 0.6873674594518877 7.11045257303523 >50 0.035758999251898106 1.4941144579580887 >100 0.02582594390414863 3.2870518075077952 >500 0.003973222139099789 1.5053129489644808 >1k 0.002979916604324842 2.7996227515979966 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2546 1.3298858680038654 No Hit TCTGTCTCTTATACACATCTGACGCAACGTTGCTCGTATGCCGTCTTCTGC 1200 0.6268118780850898 TruSeq Adapter, Index 27 (95% over 22bp) CTGTCTCTTATACACATCTGACGCAACGTTGCTCGTATGCCGTCTTCTGCT 1004 0.5244326046645251 Illumina Single End Adapter 1 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCAACGTTGCTCGTATGCCGTCTTCTGC 654 0.34161247355637386 TruSeq Adapter, Index 27 (95% over 22bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAACGTTGCTCGTATGCC 639 0.33377732508031027 No Hit CCTGTCTCTTATACACATCTGACGCAACGTTGCTCGTATGCCGTCTTCTGC 635 0.33168795215336 TruSeq Adapter, Index 27 (95% over 22bp) CGGCTGTCTCTTATACACATCTGACGCAACGTTGCTCGTATGCCGTCTTCT 626 0.3269868630677218 No Hit TTCCTGTCTCTTATACACATCTGACGCAACGTTGCTCGTATGCCGTCTTCT 369 0.1927446525111651 No Hit TCCTGTCTCTTATACACATCTGACGCAACGTTGCTCGTATGCCGTCTTCTG 366 0.19117762281595235 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCAACGTTGCTCGTATGCCGTCT 339 0.17707435555903783 No Hit CGTTCTGTCTCTTATACACATCTGACGCAACGTTGCTCGTATGCCGTCTTC 307 0.16035937214343546 No Hit CGTTTCTGTCTCTTATACACATCTGACGCAACGTTGCTCGTATGCCGTCTT 302 0.15774765598474758 No Hit CGTCTGTCTCTTATACACATCTGACGCAACGTTGCTCGTATGCCGTCTTCT 288 0.15043485074042154 No Hit CGCTGTCTCTTATACACATCTGACGCAACGTTGCTCGTATGCCGTCTTCTG 278 0.1452114184230458 No Hit CGTTTTTTTCTGTCTCTTATACACATCTGACGCAACGTTGCTCGTATGCCG 254 0.13267518086134397 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCAACGTTGCTCGTATGCCGTC 252 0.13163049439786884 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAACGTTGCTCGTATGC 247 0.12901877823918098 No Hit CGTTTTTTCTGTCTCTTATACACATCTGACGCAACGTTGCTCGTATGCCGT 241 0.12588471884875552 No Hit TTTCCTGTCTCTTATACACATCTGACGCAACGTTGCTCGTATGCCGTCTTC 235 0.12275065945833008 No Hit TTCTGTCTCTTATACACATCTGACGCAACGTTGCTCGTATGCCGTCTTCTG 227 0.11857191360442948 No Hit GCCTGTCTCTTATACACATCTGACGCAACGTTGCTCGTATGCCGTCTTCTG 193 0.10081224372535194 TruSeq Adapter, Index 27 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5808456736921831 0.0 2 0.0 0.0 0.0 2.0397503199352296 0.0 3 0.0 0.0 0.0 2.979968137062864 0.0 4 0.0 0.0 0.0 4.691686907466896 0.0 5 0.0 0.0 0.0 6.774791715636344 0.0 6 0.0 0.0 0.0 8.293243490297474 0.0 7 0.0 0.0 0.0 9.537987411528116 0.0 8 0.0 0.0 0.0 11.109718195826478 0.0 9 0.0 0.0 0.0 12.169030269790278 0.0 10 0.0 0.0 0.0 13.80344224189715 0.0 11 0.0 0.0 0.0 16.369192196192117 0.0 12 0.0 0.0 0.0 18.296116378072032 0.0 13 0.0 0.0 0.0 19.018517067565096 0.0 14 0.0 0.0 0.0 19.31938676904594 0.0 15 0.0 0.0 0.0 19.671446107237067 0.0 16 0.0 0.0 0.0 20.45861735746559 0.0 17 0.0 0.0 0.0 21.689258011439318 0.0 18 0.0 0.0 0.0 23.133014703961972 0.0 19 0.0 0.0 0.0 23.89824753845752 0.0 20 0.0 0.0 0.0 24.641541957220088 0.0 21 0.0 0.0 0.0 25.5133328109901 0.0 22 0.0 0.0 0.0 26.376243829820574 0.0 23 0.0 0.0 0.0 27.291389171824807 0.0 24 0.0 0.0 0.0 27.931259630703334 0.0 25 0.0 0.0 0.0 28.488599858967326 0.0 26 0.0 0.0 0.0 28.97960249680065 0.0 27 0.0 0.0 0.0 29.488887147744784 0.0 28 0.0 0.0 0.0 29.971009950638564 0.0 29 0.0 0.0 0.0 30.51267988195043 0.0 30 0.0 0.0 0.0 31.11546397137559 0.0 31 0.0 0.0 0.0 31.62788268171015 0.0 32 0.0 0.0 0.0 32.13403327326386 0.0 33 0.0 0.0 0.0 32.63234871634151 0.0 34 0.0 0.0 0.0 33.14424508344433 0.0 35 0.0 0.0 0.0 33.649350988534565 0.0 36 0.0 0.0 0.0 34.13513019405051 0.0 37 0.0 0.0 0.0 34.61516362401734 0.0 38 0.0 0.0 0.0 35.14220794484056 0.0 39 0.0 0.0 0.0 35.711562067434514 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTCT 30 2.1559954E-6 45.000004 1 ATGGGTA 20 7.0185435E-4 45.0 5 TCGTTCA 25 3.8785896E-5 45.0 16 CGTGCGG 25 3.8785896E-5 45.0 2 TAGCGGG 20 7.0185435E-4 45.0 3 CGTTCAT 25 3.8785896E-5 45.0 17 TTATCAC 25 3.8785896E-5 45.0 38 TCGGCAC 20 7.0185435E-4 45.0 35 TCGTGCG 25 3.8785896E-5 45.0 1 CCCCGAT 25 3.8785896E-5 45.0 40 ACGGCGG 25 3.8785896E-5 45.0 16 CGTAGGG 20 7.0185435E-4 45.0 3 TCTCGCG 20 7.0185435E-4 45.0 1 GCGGGCT 35 1.204844E-7 45.0 5 CGGGACG 20 7.0185435E-4 45.0 6 AATTATC 25 3.8785896E-5 45.0 45 ATGCGGG 25 3.8785896E-5 45.0 3 CTCTCGG 25 3.8785896E-5 45.0 2 CGATCCC 25 3.8785896E-5 45.0 43 CCTGCGG 20 7.0185435E-4 45.0 2 >>END_MODULE