SRR2934409.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934409.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	913088
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCTGC	4096	0.44858764982126587	TruSeq Adapter, Index 16 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCTGCT	3675	0.4024803742903203	TruSeq Adapter, Index 13 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCTGC	3428	0.37542931239924304	TruSeq Adapter, Index 16 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCTGC	2655	0.29077153571178244	TruSeq Adapter, Index 16 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2330	0.2551780332235228	No Hit
TCCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCTG	1454	0.1592398542090138	No Hit
TTCCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCT	1019	0.11159932010934323	No Hit
GCCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCTG	983	0.10765665521833602	No Hit
TGCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCTG	927	0.10152362094343591	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGAAC	20	7.0325244E-4	45.0	24
CTATCGG	20	7.0325244E-4	45.0	2
GTTAGCG	20	7.0325244E-4	45.0	1
CCTCGAC	20	7.0325244E-4	45.0	17
CGTTAAC	25	3.890174E-5	45.0	6
TAACCGT	20	7.0325244E-4	45.0	12
TATTCGA	20	7.0325244E-4	45.0	41
TCGCTAG	20	7.0325244E-4	45.0	1
TGCTCGA	20	7.0325244E-4	45.0	14
CGGTCAC	20	7.0325244E-4	45.0	28
CGGTAAT	25	3.890174E-5	45.0	6
CGCTTAG	20	7.0325244E-4	45.0	32
ACGGTAC	20	7.0325244E-4	45.0	17
CCACGAA	30	2.1650103E-6	44.999996	15
TTTCGCG	230	0.0	44.02174	1
ACGTATA	80	0.0	42.1875	18
CGTTTGG	540	0.0	41.250004	2
CGGGACG	50	1.0804797E-9	40.5	6
GCGCGAC	185	0.0	40.135136	9
CGTTAGG	135	0.0	40.000004	2