SRR2934406.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934406.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1900160
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGCTTCAGTTCGTATGCCGTCTTCTGCT	7325	0.3854938531492085	Illumina Single End Adapter 2 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCGCTTCAGTTCGTATGCCGTCTTCTGC	6282	0.3306037386325362	Illumina Single End Adapter 2 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGCTTCAGTTCGTATGCCGTCTTCTGC	5665	0.29813278881778377	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGCTTCAGTTCGTATGCCGTCTTCTGC	4701	0.24740021892893227	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4354	0.2291385988548333	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	2178	0.11462192657460425	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTTCAGTTCGTATGCC	2027	0.10667522734927584	No Hit
TCCTGTCTCTTATACACATCTGACGCGCTTCAGTTCGTATGCCGTCTTCTG	1973	0.10383336140114517	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAT	20	7.0344517E-4	45.0	34
TATCGCG	50	2.1827873E-11	45.0	32
CGTGAAT	30	2.1662545E-6	44.999996	11
TTGGGCA	1990	0.0	40.025127	5
TTTGGGC	4155	0.0	39.909748	4
CGTTTTT	2550	0.0	39.882355	1
TCTTGCG	645	0.0	39.418606	1
GCGATAG	40	3.4598088E-7	39.375	9
TTACGGG	335	0.0	38.955223	3
GCGATGT	480	0.0	38.906246	9
TCAAGCG	295	0.0	38.898304	17
CGTTCAT	250	0.0	38.7	17
TACGGGA	175	0.0	38.571426	4
TGGGCGA	2180	0.0	38.497707	6
TTTGGGA	8615	0.0	38.470688	4
GCGCGAC	305	0.0	38.360657	9
TTGGGAC	3320	0.0	38.15512	5
CCCCGAT	230	0.0	38.152176	40
TTTCGCG	575	0.0	37.95652	1
CGTTTGG	1495	0.0	37.77592	2