##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934404.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1380467 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.10221903167551 33.0 31.0 34.0 30.0 34.0 2 32.28666096328271 34.0 31.0 34.0 30.0 34.0 3 32.36227595444151 34.0 31.0 34.0 30.0 34.0 4 35.884574567881735 37.0 35.0 37.0 35.0 37.0 5 35.83475302198459 37.0 35.0 37.0 35.0 37.0 6 35.45953651916344 37.0 35.0 37.0 33.0 37.0 7 35.80838730661436 37.0 35.0 37.0 35.0 37.0 8 35.909273456011626 37.0 35.0 37.0 35.0 37.0 9 37.66890552255143 39.0 38.0 39.0 35.0 39.0 10 37.161821325681814 39.0 37.0 39.0 34.0 39.0 11 37.03315834424148 39.0 37.0 39.0 33.0 39.0 12 36.77403806103297 39.0 35.0 39.0 33.0 39.0 13 36.6005757471928 39.0 35.0 39.0 33.0 39.0 14 37.38506099747404 40.0 36.0 41.0 32.0 41.0 15 37.53219453996365 40.0 36.0 41.0 32.0 41.0 16 37.71074498702251 40.0 36.0 41.0 33.0 41.0 17 37.7255602633022 40.0 36.0 41.0 33.0 41.0 18 37.729721174066455 39.0 36.0 41.0 33.0 41.0 19 37.7639436509529 40.0 36.0 41.0 33.0 41.0 20 37.66213462545646 39.0 36.0 41.0 33.0 41.0 21 37.50583099777104 39.0 36.0 41.0 32.0 41.0 22 37.654525606189786 39.0 36.0 41.0 33.0 41.0 23 37.62523262055522 39.0 36.0 41.0 33.0 41.0 24 37.53514499078935 39.0 35.0 41.0 33.0 41.0 25 37.429774127161316 39.0 35.0 41.0 32.0 41.0 26 37.37053330503373 39.0 35.0 41.0 32.0 41.0 27 37.30441582449997 39.0 35.0 41.0 32.0 41.0 28 37.17602014390782 39.0 35.0 41.0 32.0 41.0 29 37.09152047821498 39.0 35.0 41.0 32.0 41.0 30 37.07411912055848 39.0 35.0 41.0 32.0 41.0 31 36.9483087969506 39.0 35.0 41.0 31.0 41.0 32 36.86679290414041 39.0 35.0 41.0 31.0 41.0 33 36.82509904257038 39.0 35.0 41.0 31.0 41.0 34 36.635198813155256 39.0 35.0 41.0 30.0 41.0 35 36.631070500055415 39.0 35.0 41.0 30.0 41.0 36 36.49409294101199 39.0 35.0 40.0 30.0 41.0 37 36.42232664743163 39.0 35.0 40.0 30.0 41.0 38 36.34777651331035 39.0 35.0 40.0 30.0 41.0 39 36.2636803342637 39.0 35.0 40.0 30.0 41.0 40 36.12593129716248 38.0 35.0 40.0 30.0 41.0 41 36.01087313206328 38.0 35.0 40.0 29.0 41.0 42 36.00778721983213 38.0 35.0 40.0 29.0 41.0 43 35.94054765525 38.0 35.0 40.0 29.0 41.0 44 35.8160760090607 38.0 35.0 40.0 29.0 41.0 45 35.88746706730404 38.0 35.0 40.0 29.0 41.0 46 35.83036102999927 38.0 35.0 40.0 29.0 41.0 47 35.613453997813785 38.0 34.0 40.0 29.0 41.0 48 35.50830407391122 38.0 34.0 40.0 28.0 41.0 49 35.54172537264564 38.0 34.0 40.0 28.0 41.0 50 35.41679083962166 38.0 34.0 40.0 28.0 41.0 51 34.40392635245899 37.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 6.0 9 22.0 10 38.0 11 45.0 12 29.0 13 25.0 14 32.0 15 51.0 16 97.0 17 165.0 18 341.0 19 639.0 20 1095.0 21 1745.0 22 2674.0 23 4008.0 24 5848.0 25 8446.0 26 11367.0 27 14392.0 28 17433.0 29 21602.0 30 26892.0 31 34719.0 32 46403.0 33 64878.0 34 102310.0 35 105295.0 36 118787.0 37 175066.0 38 286448.0 39 329457.0 40 112.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.877306013110058 5.062127526409541 54.43418785092291 15.62637860955749 2 20.67807488335469 4.712390806879122 52.24065479290704 22.36887951685915 3 21.379866378551608 4.912902662649668 50.67792276092076 23.029308197877967 4 19.86313327301558 5.24829640983812 49.523965440680584 25.36460487646572 5 18.17529864893547 6.034045000713527 50.09152699774786 25.69912935260314 6 22.680078553127313 6.611168539342121 52.85160746327149 17.857145444259082 7 82.78727416156995 2.7010424733079454 9.60877731955925 4.902906045562842 8 83.76274115933231 2.901988964604007 8.07719416690149 5.258075709162189 9 77.96405129568473 5.472133705477929 10.468921024551836 6.0948939742855135 10 41.244593315160735 24.059321954092347 18.91671441620843 15.779370314538484 11 29.137530994945916 24.726270167993874 26.1420229531021 19.99417588395811 12 27.69193323708571 21.031506004851984 31.227258601618146 20.04930215644416 13 27.08677570706145 21.75234902391727 31.98229294869055 19.17858232033073 14 20.925092740355254 23.30624346688476 34.54323790427442 21.225425888485564 15 18.698889578671565 24.569221864774747 35.81266339579287 20.919225160760817 16 23.787022797357707 24.09068815118362 29.981882942511483 22.14040610894719 17 24.0593943933466 24.298588810887907 28.071152733096845 23.570864062668647 18 24.47251546034784 22.857192529774345 31.90137830169066 20.768913708187156 19 25.081512270847472 24.704465952463913 28.970703392402715 21.243318384285896 20 23.469086910444073 28.42175872367829 29.172301836987046 18.936852528890586 21 23.710019870087443 24.80885091784157 32.074942754879324 19.40618645719166 22 21.854560811667355 23.17556305221349 32.1061640734621 22.863712062657058 23 21.933302281039676 23.987679531636758 31.024138932694516 23.05487925462905 24 21.901718766185645 25.698477399314868 29.114929947619174 23.28487388688031 25 23.036986758828714 25.352579960259824 26.93573986194527 24.67469341896619 26 20.081682503094967 25.69623178243305 27.730615798856473 26.49146991561551 27 19.378442222813007 24.93105593976531 31.99178249099761 23.69871934642407 28 17.460105891701865 24.339516989540495 30.387108130799216 27.813268987958423 29 19.58866093865337 25.31650521164215 30.39761182266581 24.697222027038677 30 22.62618374796355 23.70357277645898 30.81261631027761 22.85762716529986 31 21.13661536277216 24.56444087399409 30.436366823690825 23.862576939542922 32 22.891818493306975 24.078301038706467 28.71904942313 24.31083104485656 33 22.927748363416146 22.990335879090193 29.603605156805628 24.478310600688026 34 18.51033019985266 22.95904212125317 31.92057470406754 26.610052974826637 35 18.926059080006983 24.71055084982111 29.694081785366837 26.66930828480507 36 21.84470907308903 23.518852678115447 29.433879984092336 25.20255826470318 37 19.017332540364965 25.570911872576453 30.29293710027114 25.118818486787443 38 20.378393688512656 24.275770445798415 30.82724903963659 24.518586826052342 39 19.492316730497723 22.591557784430922 31.66370510848865 26.25242037658271 40 21.407683052184513 22.149750772745744 31.168148170148218 25.27441800492152 41 19.136422674355853 22.595324625652044 29.729866776967505 28.5383859230246 42 19.534693694235354 22.02066402166803 30.91620444385849 27.528437840238123 43 19.574752601836913 22.478697426305736 31.266086041897417 26.680463929959934 44 20.649026742399492 21.858472531396984 29.791005507556502 27.701495218647022 45 19.423137242686714 21.78943792209448 29.212360744588604 29.5750640906302 46 19.83343317877211 21.611237356633662 31.43494194355968 27.12038752103455 47 17.181142323576008 23.031843571776797 33.53328982148794 26.25372428315925 48 17.322905944147887 24.304239072719593 32.024959669445195 26.347895313687324 49 20.653807733180148 21.416303323440548 32.68937250944789 25.240516433931415 50 19.105925748315606 21.694107863498367 30.608772248811455 28.591194139374576 51 18.366465840907463 22.1514893148478 28.760122480291088 30.721922363953645 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 265.0 1 763.5 2 1262.0 3 3029.5 4 4797.0 5 3335.5 6 1874.0 7 1914.0 8 1954.0 9 2077.5 10 2201.0 11 2433.5 12 2666.0 13 2638.0 14 2610.0 15 2591.5 16 2573.0 17 2690.0 18 2807.0 19 2824.0 20 2841.0 21 3512.0 22 4183.0 23 5134.5 24 6086.0 25 7182.5 26 10286.0 27 12293.0 28 14227.5 29 16162.0 30 18462.5 31 20763.0 32 24508.0 33 28253.0 34 31524.0 35 34795.0 36 40278.5 37 45762.0 38 49134.0 39 52506.0 40 58164.0 41 63822.0 42 70268.5 43 76715.0 44 86048.5 45 95382.0 46 109992.5 47 124603.0 48 141574.5 49 158546.0 50 151478.0 51 144410.0 52 123255.0 53 102100.0 54 92805.0 55 83510.0 56 76105.5 57 68701.0 58 63108.0 59 57515.0 60 50723.5 61 43932.0 62 37350.0 63 30768.0 64 27822.0 65 24876.0 66 21279.0 67 17682.0 68 15629.5 69 13577.0 70 11037.0 71 8497.0 72 6617.5 73 4738.0 74 3859.0 75 2395.5 76 1811.0 77 1317.0 78 823.0 79 598.5 80 374.0 81 248.0 82 122.0 83 76.0 84 30.0 85 18.0 86 6.0 87 6.0 88 6.0 89 5.0 90 4.0 91 4.5 92 5.0 93 2.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1380467.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.074023205201453 #Duplication Level Percentage of deduplicated Percentage of total 1 71.45319497425226 20.059786537929412 2 11.873458863661254 6.666715193288618 3 4.67536332115304 3.9376877511239443 4 2.451949646077232 2.7534436504783084 5 1.4355313145430293 2.0150569718137175 6 0.9297319691306378 1.56607901255947 7 0.6373373817702309 1.252483711175186 8 0.475281627556267 1.0674453952816443 9 0.39252835658330737 0.9917865172277425 >10 4.4435037712007 31.36953716142241 >50 1.1294676390584781 20.237287270118216 >100 0.09481517052479277 4.853500936901859 >500 0.004962777509525394 0.9049533901236658 >1k 0.0023507893466172916 1.575253928096312 >5k 5.223976325816204E-4 0.748982572459535 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTGCT 5185 0.3755975332985142 TruSeq Adapter, Index 10 (96% over 25bp) TCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTGC 5029 0.3642970096351452 RNA PCR Primer, Index 35 (95% over 23bp) GCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTGC 4751 0.3441588969529876 RNA PCR Primer, Index 35 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTGC 4539 0.32880177505148617 RNA PCR Primer, Index 10 (95% over 24bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2751 0.19928038844825702 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 2087 0.15118072362468643 No Hit TCCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTG 2012 0.14574777955575902 TruSeq Adapter, Index 10 (95% over 23bp) GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC 1556 0.11271547961668044 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.621962712618266E-4 0.0 0.0 0.4073983659153026 0.0 2 3.621962712618266E-4 0.0 0.0 1.5820008736174063 0.0 3 4.3463552551419195E-4 0.0 0.0 2.2615535177588453 0.0 4 4.3463552551419195E-4 0.0 0.0 3.0551979873477597 0.0 5 4.3463552551419195E-4 0.0 0.0 4.332736675342475 0.0 6 5.070747797665572E-4 0.0 0.0 5.1360880050012065 0.0 7 5.070747797665572E-4 0.0 0.0 5.827375808331529 0.0 8 5.070747797665572E-4 0.0 0.0 6.947793753852863 0.0 9 5.070747797665572E-4 0.0 0.0 7.486596926981956 0.0 10 5.070747797665572E-4 0.0 0.0 8.5444997960835 0.0 11 5.070747797665572E-4 0.0 0.0 10.536072213243779 0.0 12 5.070747797665572E-4 0.0 0.0 12.11452356340282 0.0 13 5.070747797665572E-4 0.0 0.0 12.636810586562374 0.0 14 5.795140340189226E-4 0.0 0.0 12.839568059214743 0.0 15 5.795140340189226E-4 0.0 0.0 13.132874599682571 0.0 16 5.795140340189226E-4 0.0 0.0 13.801923551957417 0.0 17 6.51953288271288E-4 0.0 0.0 14.780288119889864 0.0 18 6.51953288271288E-4 0.0 0.0 15.824862166208971 0.0 19 6.51953288271288E-4 0.0 0.0 16.522379745404997 0.0 20 6.51953288271288E-4 0.0 0.0 17.328338888216813 0.0 21 6.51953288271288E-4 0.0 0.0 18.426662861191176 0.0 22 6.51953288271288E-4 0.0 0.0 19.5819240880079 0.0 23 6.51953288271288E-4 0.0 0.0 20.637508900973366 0.0 24 6.51953288271288E-4 0.0 0.0 21.425792865747606 0.0 25 6.51953288271288E-4 0.0 0.0 22.130119734843355 0.0 26 7.243925425236532E-4 0.0 0.0 22.7501997512436 0.0 27 7.243925425236532E-4 0.0 0.0 23.46800032163029 0.0 28 7.243925425236532E-4 0.0 0.0 24.129153395191626 0.0 29 7.968317967760186E-4 0.0 0.0 24.925043481662364 0.0 30 7.968317967760186E-4 0.0 0.0 25.826622440087302 0.0 31 8.692710510283839E-4 0.0 0.0 26.49139747636126 0.0 32 8.692710510283839E-4 0.0 0.0 27.156969344431992 0.0 33 8.692710510283839E-4 0.0 0.0 27.83253782958955 0.0 34 8.692710510283839E-4 0.0 0.0 28.572215054760456 0.0 35 8.692710510283839E-4 0.0 0.0 29.333841373969822 0.0 36 8.692710510283839E-4 0.0 0.0 29.982172699528494 0.0 37 8.692710510283839E-4 0.0 0.0 30.637313314986883 0.0 38 9.417103052807491E-4 0.0 0.0 31.40741502694378 0.0 39 9.417103052807491E-4 0.0 0.0 32.813968026761955 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTACGA 35 1.2121745E-7 45.0 8 CTAACGT 20 7.033781E-4 45.0 24 CCCGTCG 25 3.8912156E-5 45.0 25 CTCGCTA 20 7.033781E-4 45.0 25 CGCAATA 20 7.033781E-4 45.0 3 TACCGAC 20 7.033781E-4 45.0 45 CGAATAT 165 0.0 40.90909 14 CGTTTTT 1635 0.0 39.908257 1 TGGGCGA 1405 0.0 39.7153 6 TACGAAT 170 0.0 39.705883 12 TAGCGAT 40 3.4588993E-7 39.375 39 CATACGG 40 3.4588993E-7 39.375 3 TATCGCG 40 3.4588993E-7 39.375 1 GCGCGAC 155 0.0 39.19355 9 CTACGTA 115 0.0 39.130432 19 CTACGAA 175 0.0 38.57143 11 TACCCGT 35 6.2492036E-6 38.571426 36 CGAGTCA 35 6.2492036E-6 38.571426 19 TTATCCG 35 6.2492036E-6 38.571426 1 ACTCGTA 35 6.2492036E-6 38.571426 44 >>END_MODULE