SRR2934402.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934402.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2199516
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5844	0.26569481649599275	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC	3810	0.17321992656566262	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGCT	3229	0.14680502437809045	Illumina Single End Adapter 1 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC	2889	0.1313470781753804	Illumina Single End Adapter 1 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC	2500	0.11366136913757391	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACCGGT	50	1.0822987E-9	40.5	40
AGTACGC	85	0.0	39.705883	17
CGTTTTT	3410	0.0	39.325516	1
CACGACC	980	0.0	39.030613	27
TTTGGGA	12865	0.0	38.93121	4
AACACGT	955	0.0	38.874348	41
TCGTTCA	250	0.0	38.7	16
TAAGCGA	70	0.0	38.571426	19
TTGGGAT	7125	0.0	38.463158	5
CGTGCGG	390	0.0	38.076923	2
TACGGGA	315	0.0	37.857143	4
TTGGGAC	5015	0.0	37.821537	5
TTGTTCG	530	0.0	37.78302	1
TTTGGGC	5795	0.0	37.467648	4
CGACCAA	1015	0.0	37.463055	29
TCTTGCG	790	0.0	37.310127	1
TGGGCGA	3000	0.0	37.274998	6
TCAAGCG	1075	0.0	37.255814	17
GCGATGT	535	0.0	37.009346	9
AGACACG	1060	0.0	36.933964	24