SRR2934401.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934401.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	792969
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGC	2820	0.35562550364516143	TruSeq Adapter, Index 13 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGCT	2620	0.33040383671997264	TruSeq Adapter, Index 19 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGC	2126	0.26810631941475643	TruSeq Adapter, Index 13 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2005	0.2528472109250173	No Hit
GCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGC	1862	0.2348137190735073	TruSeq Adapter, Index 13 (95% over 21bp)
TCCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTG	980	0.12358616793342488	No Hit

Adapter graph

$Kmer graph$

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCTATCG	30	2.1646465E-6	45.000004	1
CGGTAGT	30	2.1646465E-6	45.000004	12
TCGCAAC	20	7.031963E-4	45.0	16
CATATCG	20	7.031963E-4	45.0	27
GATCGAC	20	7.031963E-4	45.0	15
CAACGAA	20	7.031963E-4	45.0	17
GACGTCC	20	7.031963E-4	45.0	28
CGTTGAT	25	3.8897077E-5	45.0	25
TCGGATT	20	7.031963E-4	45.0	31
CGAATTG	20	7.031963E-4	45.0	27
CGAATAC	20	7.031963E-4	45.0	28
AGACACG	35	1.2112832E-7	45.0	10
CGTCGGT	25	3.8897077E-5	45.0	43
GACGCAT	25	3.8897077E-5	45.0	38
TGTCGCG	35	1.2112832E-7	45.0	1
ATCGCTA	25	3.8897077E-5	45.0	14
TCGGTAC	25	3.8897077E-5	45.0	45
CCGCACG	20	7.031963E-4	45.0	22
TCGCGCG	20	7.031963E-4	45.0	1
TCGCGAG	25	3.8897077E-5	45.0	1