Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934394.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2151324 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 42 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 37181 | 1.7282845354767575 | No Hit |
CTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTCTGCT | 6501 | 0.30218600266626505 | No Hit |
CGCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTCTG | 5769 | 0.26816044445188175 | No Hit |
CGTTTCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTT | 5669 | 0.26351214414937035 | No Hit |
CGTTCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTC | 5440 | 0.25286753645661925 | No Hit |
CCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTCTGC | 5195 | 0.24147920071546639 | No Hit |
CGTTTTCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCT | 5002 | 0.2325079811316194 | No Hit |
TCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTCTGC | 4283 | 0.19908670195656256 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCC | 4198 | 0.1951356466994279 | No Hit |
GCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTCTGC | 3472 | 0.16138898650319525 | No Hit |
CGTCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTCT | 3059 | 0.14219150625382324 | No Hit |
CGTTTTTCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTC | 2542 | 0.11815979368983937 | No Hit |
CGTTTTTTCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGT | 2442 | 0.113511493387328 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGTAAT | 20 | 7.0346595E-4 | 45.0 | 18 |
CGTTTTT | 24075 | 0.0 | 44.27103 | 1 |
GTTTTTT | 27435 | 0.0 | 39.054127 | 2 |
TGGGCGA | 2655 | 0.0 | 38.81356 | 6 |
CGTTAGT | 30 | 1.1402529E-4 | 37.499996 | 16 |
TTCGTTG | 940 | 0.0 | 37.101063 | 1 |
TATTGCG | 85 | 0.0 | 37.058823 | 1 |
TTGGGAC | 4550 | 0.0 | 36.98901 | 5 |
TCTTGCG | 645 | 0.0 | 36.976746 | 1 |
TTTCGCG | 555 | 0.0 | 36.89189 | 1 |
CGTTCTG | 855 | 0.0 | 36.842106 | 1 |
TTTGGGC | 4815 | 0.0 | 36.775703 | 4 |
GGCGATT | 2425 | 0.0 | 36.742264 | 8 |
TTGGGCG | 2115 | 0.0 | 36.70213 | 5 |
TTGGGAT | 7330 | 0.0 | 36.681446 | 5 |
GTTGGGA | 3640 | 0.0 | 36.65522 | 4 |
GGGCGAT | 4520 | 0.0 | 36.58739 | 7 |
GCGATTG | 615 | 0.0 | 36.585365 | 9 |
GCGGGCG | 480 | 0.0 | 36.5625 | 5 |
CGTTTTC | 705 | 0.0 | 36.382977 | 1 |