SRR2934387.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934387.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2286739
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26324	1.1511589210661997	No Hit
CTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTCTGCT	4953	0.2165966470156848	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTCTGC	4486	0.19617455249593416	TruSeq Adapter, Index 21 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTCTGC	4241	0.18546060569221062	TruSeq Adapter, Index 21 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTCTGC	2992	0.13084134219077911	TruSeq Adapter, Index 21 (95% over 23bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCC	2921	0.12773648413745511	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCGAG	20	7.034754E-4	45.0	44
GATAGCG	20	7.034754E-4	45.0	9
CGTTTTT	16545	0.0	44.07525	1
TACGGGT	50	1.0822987E-9	40.500004	4
CGAATAT	190	0.0	39.078945	14
TATTGCG	125	0.0	37.8	1
GTTTTTT	19725	0.0	37.73384	2
ACGCAAC	30	1.1402752E-4	37.500004	17
TTCGTAC	60	1.5643309E-10	37.500004	33
TCGTACA	60	1.5643309E-10	37.500004	34
TTTTGCG	1955	0.0	37.404095	1
TGGGCGA	2995	0.0	37.337227	6
CGGGATA	585	0.0	37.30769	6
TGCGGGA	2890	0.0	37.29239	4
TCGTTTG	745	0.0	37.14765	1
TTTGTCG	530	0.0	36.933964	1
TTTGGGA	12630	0.0	36.876488	4
TACGGGA	330	0.0	36.81818	4
GTTTGCG	435	0.0	36.724136	1
TTGGGAC	4965	0.0	36.072506	5