SRR2934385.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934385.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1660440
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11194	0.6741586567415866	No Hit
CTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGCT	7663	0.46150417961504175	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGC	5123	0.30853267808532675	No Hit
GCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGC	4594	0.2766736527667365	No Hit
CCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGC	4319	0.26011177760111776	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCC	3225	0.19422562694225626	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCG	2263	0.13628917636289176	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGC	2183	0.13147117631471175	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTC	1964	0.11828190118281902	No Hit
CGCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTG	1853	0.11159692611596927	No Hit
TCCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTG	1808	0.10888680108886802	No Hit
TTCCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCT	1735	0.10449037604490376	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATTGCG	20	7.034193E-4	45.000004	15
TAACGGT	30	2.1660871E-6	45.000004	24
CGCTAAG	20	7.034193E-4	45.000004	16
GTCCGAC	30	2.1660871E-6	45.000004	19
ACTCGCG	20	7.034193E-4	45.000004	1
CCGGTAT	20	7.034193E-4	45.000004	22
TCGACGG	20	7.034193E-4	45.000004	2
CGATAAG	20	7.034193E-4	45.000004	10
GTACGAC	20	7.034193E-4	45.000004	9
TCCGGTA	20	7.034193E-4	45.000004	21
GACGTTG	35	1.2123564E-7	45.0	1
CGACCGG	25	3.8915576E-5	45.0	18
CATACGT	25	3.8915576E-5	45.0	19
ACGTCCC	35	1.2123564E-7	45.0	21
TATAGCG	35	1.2123564E-7	45.0	38
TTCGACC	25	3.8915576E-5	45.0	29
CGTTTTT	8590	0.0	43.559372	1
CCGTCGG	80	0.0	42.187504	2
GCCGATC	60	3.6379788E-12	41.250004	9
CGAATAT	60	3.6379788E-12	41.250004	14