SRR2934384.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934384.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1174513
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGC	5359	0.45627421748418284	No Hit
CTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGCT	4736	0.40323095614948495	No Hit
TCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGC	3820	0.3252411850698971	No Hit
GCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGC	3787	0.3224315099109163	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3166	0.26955853191918694	No Hit
TCCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTG	1534	0.13060732405686443	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCC	1176	0.10012660566549711	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATCGT	30	2.1655433E-6	45.000004	42
GTCCGCG	25	3.8908576E-5	45.000004	1
GTAAGCG	25	3.8908576E-5	45.000004	19
CGATCTA	30	2.1655433E-6	45.000004	5
TTTAGCG	70	0.0	45.0	1
CGAACTT	20	7.03335E-4	45.0	20
GACCGTA	20	7.03335E-4	45.0	22
GCACGTC	20	7.03335E-4	45.0	45
TAGTTCG	20	7.03335E-4	45.0	24
AGCGCGA	20	7.03335E-4	45.0	41
TGTCGAT	20	7.03335E-4	45.0	37
TACCGGT	20	7.03335E-4	45.0	40
TCTAGCG	75	0.0	42.0	1
TTATCCG	60	3.6379788E-12	41.250004	1
TCCGAAC	55	6.184564E-11	40.909092	17
CGAATAT	95	0.0	40.26316	14
TCGATTG	45	1.9283107E-8	40.000004	1
TTGAGCG	45	1.9283107E-8	40.000004	1
AGTTGCG	45	1.9283107E-8	40.000004	1
CTTTACG	45	1.9283107E-8	40.000004	1