SRR2934379.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934379.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	801476
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGCT	6135	0.7654627212792398	TruSeq Adapter, Index 21 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC	5578	0.6959659428354686	TruSeq Adapter, Index 14 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC	4904	0.6118710978245138	TruSeq Adapter, Index 14 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC	3355	0.4186026780589812	TruSeq Adapter, Index 14 (95% over 21bp)
TCCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTG	2162	0.2697523069935968	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1969	0.24567173564772993	No Hit
TTCCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCT	1283	0.16007965304014093	No Hit
GCCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTG	1143	0.1426118810794085	No Hit
TGCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTG	1064	0.1327550669015666	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCC	1063	0.1326302971018471	No Hit
TTCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTG	966	0.1205276265290539	No Hit
TTTCTGGGGCAGAATATGAGAAATACACAATTTAGGACTTCAAATATGGTG	939	0.11715884193662693	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAACGAA	35	1.2113196E-7	45.000004	19
CTAACGT	35	1.2113196E-7	45.000004	30
AAACTCG	20	7.032007E-4	45.0	42
TTAGGCG	20	7.032007E-4	45.0	1
GACAGCG	25	3.8897448E-5	45.0	9
ATAGGCG	25	3.8897448E-5	45.0	12
TCCGATG	25	3.8897448E-5	45.0	19
CGTGCCC	20	7.032007E-4	45.0	16
CGGTTAC	20	7.032007E-4	45.0	39
GGCGTAA	25	3.8897448E-5	45.0	8
CCGTGCG	25	3.8897448E-5	45.0	38
GCGTTAG	25	3.8897448E-5	45.0	1
GCCGCTC	20	7.032007E-4	45.0	17
ATCGTTA	20	7.032007E-4	45.0	42
ATCGTAC	20	7.032007E-4	45.0	17
GTTACGG	20	7.032007E-4	45.0	2
ACAGCGG	25	3.8897448E-5	45.0	10
CATACGG	25	3.8897448E-5	45.0	3
CGTCGTG	40	6.8102963E-9	45.0	18
CCGGTTT	20	7.032007E-4	45.0	26