SRR2934377.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934377.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1645321
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4582	0.2784866904391301	No Hit
CTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGCT	3800	0.23095797111931352	No Hit
CCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGC	3778	0.22962084602335958	No Hit
TCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGC	2938	0.1785669787233008	No Hit
GCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGC	2429	0.1476307662760033	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAACCGA	30	2.1660744E-6	45.000004	32
CTCGTAG	25	3.8915423E-5	45.0	1
CGCTATA	25	3.8915423E-5	45.0	20
TAATCGC	20	7.0341746E-4	45.0	43
CGTTTTT	2535	0.0	40.029587	1
TCATACG	155	0.0	39.193546	31
CGCGCAT	145	0.0	38.793102	36
TTTGGGC	3875	0.0	38.67097	4
GTTACGT	70	0.0	38.57143	22
GCGCTAA	35	6.249933E-6	38.57143	9
TGGGCGA	2065	0.0	37.91768	6
TTCGGGC	700	0.0	37.607143	4
CGGGATA	355	0.0	37.394367	6
TTTGGGA	6470	0.0	37.31453	4
CCCGATC	140	0.0	36.964287	41
TTGGGAT	3220	0.0	36.754658	5
TCTTGCG	565	0.0	36.63717	1
TTGGGAC	2310	0.0	36.62338	5
TTGGGCA	1980	0.0	36.590908	5
CGTTTGG	990	0.0	36.363636	2