SRR2934374.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934374.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1436085
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGCT	4513	0.31425716444360885	No Hit
TCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGC	4214	0.2934366698350028	No Hit
GCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGC	3998	0.27839577740871885	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3586	0.24970666778080683	No Hit
CCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGC	2766	0.19260698356991404	No Hit
TCCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTG	1485	0.10340613543070223	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACGA	80	0.0	45.0	22
CGTATTA	20	7.0338754E-4	45.0	36
CGATTAC	20	7.0338754E-4	45.0	2
TGCGAAG	25	3.891294E-5	45.0	1
GCTTACG	25	3.891294E-5	45.0	1
CTACGAA	125	0.0	43.2	11
TTTTGCG	975	0.0	42.461536	1
TACGGGA	320	0.0	42.1875	4
CGTTTTT	1960	0.0	40.982143	1
TCGACGG	55	6.184564E-11	40.909092	2
TGTTGCG	250	0.0	40.500004	1
CGCGCAT	50	1.0822987E-9	40.5	36
TCCGATA	90	0.0	40.0	14
TTATGCG	45	1.9288564E-8	40.0	1
ACGAACG	90	0.0	40.0	21
GTTTGCG	305	0.0	39.836067	1
TACGAAT	130	0.0	39.807693	12
TGGGCGA	1730	0.0	39.797688	6
GCGATAT	85	0.0	39.705883	9
CGTTTGG	1045	0.0	39.401913	2