Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934373.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1146575 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGCT | 5948 | 0.5187624010640385 | No Hit |
TCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC | 5477 | 0.47768353574777056 | No Hit |
GCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC | 3983 | 0.3473824215598631 | No Hit |
CCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC | 3800 | 0.33142184331596275 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3224 | 0.2811852691712273 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTC | 2634 | 0.2297276671826963 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCG | 2597 | 0.2265006650240935 | No Hit |
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGC | 2491 | 0.21725573992106925 | No Hit |
TCCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTG | 2046 | 0.17844449774327892 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCC | 1730 | 0.1508841549833199 | No Hit |
TTCCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCT | 1387 | 0.1209689728103264 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTATTG | 20 | 7.033278E-4 | 45.000004 | 2 |
TAACGTG | 20 | 7.033278E-4 | 45.000004 | 18 |
CGCCTCG | 20 | 7.033278E-4 | 45.000004 | 15 |
TTCGCCC | 20 | 7.033278E-4 | 45.000004 | 13 |
CAATACG | 20 | 7.033278E-4 | 45.000004 | 18 |
ACGACAG | 20 | 7.033278E-4 | 45.000004 | 10 |
GCGACGG | 50 | 2.1827873E-11 | 44.999996 | 2 |
CGCGACA | 25 | 3.890801E-5 | 44.999996 | 30 |
GAGCGTA | 30 | 2.1654978E-6 | 44.999996 | 9 |
TGCGACG | 50 | 2.1827873E-11 | 44.999996 | 1 |
CTACCGG | 25 | 3.890801E-5 | 44.999996 | 2 |
TCGACCA | 25 | 3.890801E-5 | 44.999996 | 20 |
GCGTCAT | 25 | 3.890801E-5 | 44.999996 | 37 |
TCGCGAC | 25 | 3.890801E-5 | 44.999996 | 29 |
CGTTTTT | 2100 | 0.0 | 41.89286 | 1 |
TACGGGT | 60 | 3.6379788E-12 | 41.249996 | 4 |
ACTGCGC | 110 | 0.0 | 40.909092 | 19 |
TTCCGCG | 110 | 0.0 | 40.909092 | 1 |
CGCTAAA | 110 | 0.0 | 40.909092 | 23 |
GCGCGAC | 215 | 0.0 | 40.81395 | 9 |