SRR2934373.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934373.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1146575
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGCT	5948	0.5187624010640385	No Hit
TCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC	5477	0.47768353574777056	No Hit
GCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC	3983	0.3473824215598631	No Hit
CCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC	3800	0.33142184331596275	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3224	0.2811852691712273	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTC	2634	0.2297276671826963	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCG	2597	0.2265006650240935	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGC	2491	0.21725573992106925	No Hit
TCCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTG	2046	0.17844449774327892	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCC	1730	0.1508841549833199	No Hit
TTCCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCT	1387	0.1209689728103264	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATTG	20	7.033278E-4	45.000004	2
TAACGTG	20	7.033278E-4	45.000004	18
CGCCTCG	20	7.033278E-4	45.000004	15
TTCGCCC	20	7.033278E-4	45.000004	13
CAATACG	20	7.033278E-4	45.000004	18
ACGACAG	20	7.033278E-4	45.000004	10
GCGACGG	50	2.1827873E-11	44.999996	2
CGCGACA	25	3.890801E-5	44.999996	30
GAGCGTA	30	2.1654978E-6	44.999996	9
TGCGACG	50	2.1827873E-11	44.999996	1
CTACCGG	25	3.890801E-5	44.999996	2
TCGACCA	25	3.890801E-5	44.999996	20
GCGTCAT	25	3.890801E-5	44.999996	37
TCGCGAC	25	3.890801E-5	44.999996	29
CGTTTTT	2100	0.0	41.89286	1
TACGGGT	60	3.6379788E-12	41.249996	4
ACTGCGC	110	0.0	40.909092	19
TTCCGCG	110	0.0	40.909092	1
CGCTAAA	110	0.0	40.909092	23
GCGCGAC	215	0.0	40.81395	9