FastQCFastQC Report
Sat 14 Jan 2017
SRR2934373.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934373.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1146575
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGCT59480.5187624010640385No Hit
TCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC54770.47768353574777056No Hit
GCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC39830.3473824215598631No Hit
CCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC38000.33142184331596275No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT32240.2811852691712273No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTC26340.2297276671826963No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCG25970.2265006650240935No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGC24910.21725573992106925No Hit
TCCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTG20460.17844449774327892No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCC17300.1508841549833199No Hit
TTCCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCT13870.1209689728103264No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATTG207.033278E-445.0000042
TAACGTG207.033278E-445.00000418
CGCCTCG207.033278E-445.00000415
TTCGCCC207.033278E-445.00000413
CAATACG207.033278E-445.00000418
ACGACAG207.033278E-445.00000410
GCGACGG502.1827873E-1144.9999962
CGCGACA253.890801E-544.99999630
GAGCGTA302.1654978E-644.9999969
TGCGACG502.1827873E-1144.9999961
CTACCGG253.890801E-544.9999962
TCGACCA253.890801E-544.99999620
GCGTCAT253.890801E-544.99999637
TCGCGAC253.890801E-544.99999629
CGTTTTT21000.041.892861
TACGGGT603.6379788E-1241.2499964
ACTGCGC1100.040.90909219
TTCCGCG1100.040.9090921
CGCTAAA1100.040.90909223
GCGCGAC2150.040.813959