##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934372.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1018426 Sequences flagged as poor quality 0 Sequence length 51 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.18402220681719 33.0 31.0 34.0 30.0 34.0 2 32.379197899503744 34.0 31.0 34.0 30.0 34.0 3 32.44697700176547 34.0 31.0 34.0 30.0 34.0 4 35.94276756485007 37.0 35.0 37.0 35.0 37.0 5 35.89242811947064 37.0 35.0 37.0 35.0 37.0 6 35.53272795470658 37.0 35.0 37.0 33.0 37.0 7 35.85435858864562 37.0 35.0 37.0 35.0 37.0 8 35.945441298631415 37.0 35.0 37.0 35.0 37.0 9 37.72396030737629 39.0 38.0 39.0 35.0 39.0 10 37.266113590972736 39.0 37.0 39.0 34.0 39.0 11 37.135644612372424 39.0 37.0 39.0 34.0 39.0 12 36.69248919410934 39.0 35.0 39.0 33.0 39.0 13 36.46899529273605 39.0 35.0 39.0 33.0 39.0 14 37.177235263043166 40.0 36.0 41.0 31.0 41.0 15 37.354852488055094 40.0 35.0 41.0 32.0 41.0 16 37.545780449438645 40.0 35.0 41.0 33.0 41.0 17 37.55201556126807 39.0 35.0 41.0 33.0 41.0 18 37.53687847717949 39.0 35.0 41.0 33.0 41.0 19 37.55013815436762 39.0 35.0 41.0 33.0 41.0 20 37.4437877666124 39.0 35.0 41.0 32.0 41.0 21 37.29508182234154 39.0 35.0 41.0 32.0 41.0 22 37.47528440947109 39.0 35.0 41.0 33.0 41.0 23 37.4689697631443 39.0 35.0 41.0 33.0 41.0 24 37.42296936645372 39.0 35.0 41.0 33.0 41.0 25 37.35536602561207 39.0 35.0 41.0 33.0 41.0 26 37.30848191228425 39.0 35.0 41.0 33.0 41.0 27 37.251785598560915 39.0 35.0 41.0 33.0 41.0 28 37.1333312385976 39.0 35.0 41.0 32.0 41.0 29 37.04841687073975 39.0 35.0 41.0 32.0 41.0 30 37.0013550321771 39.0 35.0 41.0 32.0 41.0 31 36.86647139802008 39.0 35.0 41.0 31.0 41.0 32 36.76659767130847 39.0 35.0 41.0 31.0 41.0 33 36.739694391148696 39.0 35.0 41.0 31.0 41.0 34 36.522883351367696 39.0 35.0 41.0 31.0 41.0 35 36.428357092218775 39.0 35.0 41.0 30.0 41.0 36 36.30796935663465 38.0 35.0 40.0 30.0 41.0 37 36.25348233450442 38.0 35.0 40.0 30.0 41.0 38 36.176173821171105 38.0 35.0 40.0 30.0 41.0 39 36.12047316152573 38.0 35.0 40.0 30.0 41.0 40 35.92349665071394 38.0 35.0 40.0 29.0 41.0 41 35.78253206418532 38.0 35.0 40.0 29.0 41.0 42 35.77018556085567 38.0 35.0 40.0 29.0 41.0 43 35.745661442264826 38.0 35.0 40.0 29.0 41.0 44 35.590304057437656 38.0 34.0 40.0 29.0 41.0 45 35.65231052624344 37.0 34.0 40.0 29.0 41.0 46 35.57987914684032 37.0 34.0 40.0 29.0 41.0 47 35.33924703414878 37.0 34.0 40.0 29.0 41.0 48 35.24200383729402 37.0 34.0 40.0 28.0 41.0 49 35.251640276269455 37.0 34.0 40.0 28.0 41.0 50 35.124962442042914 36.0 34.0 40.0 28.0 41.0 51 34.13462146488797 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 5.0 9 10.0 10 25.0 11 24.0 12 16.0 13 18.0 14 29.0 15 55.0 16 97.0 17 151.0 18 290.0 19 504.0 20 883.0 21 1363.0 22 2237.0 23 3056.0 24 4498.0 25 6382.0 26 8554.0 27 10739.0 28 12854.0 29 15582.0 30 19731.0 31 25729.0 32 34725.0 33 50710.0 34 90193.0 35 86155.0 36 84501.0 37 126146.0 38 200460.0 39 232644.0 40 59.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.93416311052546 4.856612066070584 53.05599032232091 17.153234501083045 2 21.16884290071149 4.643243593545334 51.76704051153447 22.42087299420871 3 22.55804545445619 4.984652787733228 50.43194105413649 22.025360703674103 4 20.3797821343917 5.333819050181359 49.13356493255278 25.15283388287416 5 18.90220791692278 6.501797872403101 48.63092654743693 25.96506766323719 6 22.816679856955734 6.464976345851343 52.08105448996785 18.63728930722507 7 83.75915383150077 2.63465386783134 8.904525218327104 4.701667082340789 8 84.87597527949994 3.0880005027365756 7.3775610599100965 4.658463157853393 9 79.64712212767544 5.03492644531856 9.649891106472145 5.668060320533844 10 44.49925669611734 24.240641931765293 16.667288541337317 14.592812830780048 11 34.87469879991281 21.823676928907943 23.46896092597793 19.832663345201322 12 31.537392014736465 18.9347090510258 28.75211355562407 20.775785378613666 13 28.880154277286714 20.717067317605796 29.960350580209067 20.44242782489842 14 22.09271954957945 22.628840976173038 33.46850924858556 21.80993022566195 15 19.90355705765564 22.28949378747204 35.761753922229005 22.045195232643312 16 26.808526098116115 21.813170519998508 29.739225039423584 21.639078342461797 17 27.73741047459511 21.804431544363556 26.616465015622147 23.84169296541919 18 29.46821860400265 21.463218731650606 28.767824073619487 20.30073859072726 19 27.694108359370244 23.692246662987788 26.54694597349243 22.06669900414954 20 26.944323888038994 27.688511487334377 26.445220369472107 18.92194425515452 21 26.360285381559383 25.708200694012135 29.851751624565754 18.07976229986273 22 24.84068552845273 21.06436795604197 31.233786254475042 22.861160261030257 23 23.320791103133658 23.16633707309122 31.040154120181533 22.472717703593585 24 24.869357223794363 24.514397707835425 28.53579936097468 22.08044570739553 25 26.321401849520733 23.68674798168939 25.43827435670338 24.553575812086496 26 22.069939298486098 23.920736509083625 26.892675560129064 27.116648632301217 27 21.01861107238032 22.430692067955846 31.659639482888302 24.89105737677553 28 18.238929485303792 24.727766180360675 29.502781743592564 27.53052259074297 29 20.702436897722563 25.34283295988123 28.92355458324905 25.031175559147158 30 24.209319086511933 22.660949347326167 30.222323467782637 22.907408098379264 31 24.89714520249876 22.870586571827506 29.833095384446196 22.39917284122754 32 26.652402825536665 22.720060171283922 27.390502599108824 23.237034404070595 33 26.39033174722562 21.444267919318634 27.212286410598313 24.95311392285743 34 21.081158572149572 22.092326786629563 32.616606410284106 24.209908230936758 35 21.300418488923103 24.930922816188904 30.04705300139627 23.72160569349172 36 24.093061253345848 24.886246030639438 27.439990730794385 23.58070198522033 37 21.612763224819474 26.942163691814624 27.63705954089939 23.80801354246651 38 24.129686398422663 25.650268158904034 25.916266866713926 24.303778575959374 39 22.712597675236097 22.87215762362705 26.03704147380369 28.37820322733316 40 25.998550704714923 21.592437742162907 27.92161629809137 24.4873952550308 41 22.2676954437534 21.714783401052212 27.5290497296809 28.488471425513488 42 21.364929803441782 22.574934261301262 29.156855775480988 26.903280159775967 43 21.843609648614624 20.58519715718177 29.494239149432556 28.076954044771046 44 22.464076918696104 21.447900976605077 28.422880012882622 27.665142091816197 45 22.15025932173766 20.27255784907298 27.38539668076031 30.191786148429046 46 22.635910709270973 21.146062649618138 29.576130224483666 26.641896416627226 47 19.02111690000059 22.98026562558301 32.34363616011374 25.65498131430266 48 19.70855025303753 24.762525701425535 29.98941503850059 25.539509007036347 49 23.650810171774875 21.036383595862635 30.57109696728088 24.741709265081607 50 21.952404985732883 21.842725931977387 28.83380824920024 27.371060833089494 51 20.69399249430003 22.02968109612284 27.446373128730023 29.82995328084711 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 191.0 1 775.0 2 1359.0 3 2905.0 4 4451.0 5 3064.0 6 1677.0 7 1693.5 8 1710.0 9 1729.0 10 1748.0 11 1798.0 12 1848.0 13 1778.0 14 1708.0 15 1702.0 16 1696.0 17 1689.5 18 1683.0 19 1766.0 20 1849.0 21 2364.5 22 2880.0 23 2834.5 24 2789.0 25 3322.0 26 4869.0 27 5883.0 28 7500.0 29 9117.0 30 10262.5 31 11408.0 32 13814.5 33 16221.0 34 17879.0 35 19537.0 36 21924.0 37 24311.0 38 26241.0 39 28171.0 40 33170.5 41 38170.0 42 41701.5 43 45233.0 44 51230.0 45 57227.0 46 65865.5 47 74504.0 48 87901.5 49 101299.0 50 101698.0 51 102097.0 52 91908.0 53 81719.0 54 77334.5 55 72950.0 56 70316.0 57 67682.0 58 64812.0 59 61942.0 60 55542.5 61 49143.0 62 43337.0 63 37531.0 64 32868.5 65 28206.0 66 24275.5 67 20345.0 68 17148.0 69 13951.0 70 11321.0 71 8691.0 72 7392.5 73 6094.0 74 4925.5 75 2871.0 76 1985.0 77 1524.0 78 1063.0 79 728.0 80 393.0 81 311.0 82 229.0 83 138.0 84 47.0 85 37.5 86 28.0 87 28.0 88 28.0 89 22.0 90 16.0 91 9.0 92 2.0 93 1.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1018426.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.367600149193027 #Duplication Level Percentage of deduplicated Percentage of total 1 71.57501975992078 18.1568648194026 2 11.50990579347481 5.839573758474984 3 4.473889042266896 3.4047548500824822 4 2.2984685566835075 2.332265252057601 5 1.379072019073424 1.7491873778397455 6 0.9068574383844877 1.380287813355548 7 0.6318483508519711 1.121993342353788 8 0.4895515415535419 0.9934998206841043 9 0.3949588487041587 0.901724233438145 >10 4.652634616404181 29.469958803055885 >50 1.5417612866502277 26.212170429540453 >100 0.13820257198201058 5.903165936392598 >500 0.005089613132481972 0.8678263728961016 >1k 0.0027405609174902925 1.666727190425999 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGC 3498 0.3434711996747923 TruSeq Adapter, Index 23 (95% over 24bp) CTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGCT 2806 0.2755232093446161 Illumina Single End Adapter 1 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGC 2636 0.2588307839744861 TruSeq Adapter, Index 23 (95% over 24bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2539 0.2493062824397649 No Hit GCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGC 2536 0.24901171022735083 TruSeq Adapter, Index 23 (95% over 24bp) GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 1555 0.15268659676795368 No Hit TCCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTG 1212 0.11900717381527964 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.9457221241405856E-4 0.0 0.0 0.29575050126371477 0.0 2 2.9457221241405856E-4 0.0 0.0 1.2386761532011161 0.0 3 2.9457221241405856E-4 0.0 0.0 1.8006217437496685 0.0 4 2.9457221241405856E-4 0.0 0.0 2.4080296457474573 0.0 5 2.9457221241405856E-4 0.0 0.0 3.4209652935019332 0.0 6 2.9457221241405856E-4 0.0 0.0 4.099070526479096 0.0 7 2.9457221241405856E-4 0.0 0.0 4.691062482693883 0.0 8 2.9457221241405856E-4 0.0 0.0 5.5659419535636365 0.0 9 2.9457221241405856E-4 0.0 0.0 6.004167214898284 0.0 10 2.9457221241405856E-4 0.0 0.0 6.810705932487976 0.0 11 2.9457221241405856E-4 0.0 0.0 8.322450526596924 0.0 12 2.9457221241405856E-4 0.0 0.0 9.66697629479216 0.0 13 2.9457221241405856E-4 0.0 0.0 10.144968804802705 0.0 14 2.9457221241405856E-4 0.0 0.0 10.328487293136664 0.0 15 2.9457221241405856E-4 0.0 0.0 10.59890458413277 0.0 16 2.9457221241405856E-4 0.0 0.0 11.21652432282758 0.0 17 2.9457221241405856E-4 0.0 0.0 12.012949394457722 0.0 18 2.9457221241405856E-4 0.0 0.0 12.926516015891188 0.0 19 2.9457221241405856E-4 0.0 0.0 13.526265040366212 0.0 20 2.9457221241405856E-4 0.0 0.0 14.223812039362702 0.0 21 2.9457221241405856E-4 0.0 0.0 15.112732785690861 0.0 22 2.9457221241405856E-4 0.0 0.0 15.988594163935328 0.0 23 2.9457221241405856E-4 0.0 0.0 16.813003595744807 0.0 24 2.9457221241405856E-4 0.0 0.0 17.40902137219592 0.0 25 2.9457221241405856E-4 0.0 0.0 17.95653292433618 0.0 26 2.9457221241405856E-4 0.0 0.0 18.466928377712275 0.0 27 2.9457221241405856E-4 0.0 0.0 19.07404170749765 0.0 28 2.9457221241405856E-4 0.0 0.0 19.6346126277216 0.0 29 2.9457221241405856E-4 0.0 0.0 20.298283822290475 0.0 30 2.9457221241405856E-4 0.0 0.0 21.023029655566532 0.0 31 2.9457221241405856E-4 0.0 0.0 21.53381787189251 0.0 32 2.9457221241405856E-4 0.0 0.0 22.042151319781702 0.0 33 2.9457221241405856E-4 0.0 0.0 22.587404484960125 0.0 34 2.9457221241405856E-4 0.0 0.0 23.197070773919755 0.0 35 2.9457221241405856E-4 0.0 0.0 23.866829794211853 0.0 36 2.9457221241405856E-4 0.0 0.0 24.434666829008687 0.0 37 2.9457221241405856E-4 0.0 0.0 25.01124283944047 0.0 38 2.9457221241405856E-4 0.0 0.0 25.75886711454735 0.0 39 2.9457221241405856E-4 0.0 0.0 27.169377058323334 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGAATA 20 7.032909E-4 45.0 27 AAATCCG 20 7.032909E-4 45.0 37 CGACGGC 20 7.032909E-4 45.0 20 GACCGAC 20 7.032909E-4 45.0 9 TAAGTCG 20 7.032909E-4 45.0 44 TACGGGT 25 3.890491E-5 45.0 4 CGCGACA 25 3.890491E-5 45.0 25 TAACGCC 20 7.032909E-4 45.0 12 GTTACGT 20 7.032909E-4 45.0 22 TATTACG 20 7.032909E-4 45.0 1 ACGTAAC 20 7.032909E-4 45.0 22 ACATACG 105 0.0 45.0 17 AATCGGG 20 7.032909E-4 45.0 21 ATCGACT 20 7.032909E-4 45.0 14 TATCCGG 35 1.211738E-7 45.0 2 TCATACG 30 2.1652577E-6 44.999996 31 CGACTCC 30 2.1652577E-6 44.999996 28 TTTCGCG 335 0.0 44.328358 1 CGAATAT 120 0.0 43.124996 14 TACGAAA 110 0.0 42.954544 20 >>END_MODULE