SRR2934371.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934371.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1314407
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTGCT	3742	0.28469111926518953	No Hit
TCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTGC	3568	0.2714532104591652	No Hit
CCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTGC	3131	0.23820627857277085	No Hit
GCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTGC	3063	0.233032842947428	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2917	0.22192517234007428	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATAG	25	3.891113E-5	45.0	31
CGACGTC	20	7.033657E-4	45.0	12
TAGCGTC	20	7.033657E-4	45.0	37
GACGTCT	20	7.033657E-4	45.0	13
CGCATGT	25	3.891113E-5	45.0	44
CGCATCG	20	7.033657E-4	45.0	21
CGCGCCA	20	7.033657E-4	45.0	44
CGACAGG	20	7.033657E-4	45.0	2
TAACGCC	25	3.891113E-5	45.0	12
ATTCCCG	25	3.891113E-5	45.0	1
CTAGTCG	20	7.033657E-4	45.0	1
CGTAGAC	20	7.033657E-4	45.0	33
ACTACGC	80	0.0	45.0	12
ACGCTAT	20	7.033657E-4	45.0	12
CGTCGGT	20	7.033657E-4	45.0	15
CGATCAT	20	7.033657E-4	45.0	10
CGATAAC	70	0.0	45.0	16
TAACTCG	20	7.033657E-4	45.0	36
GTACGAA	40	6.8157533E-9	45.0	22
CCGATAA	65	0.0	44.999996	15