SRR2934370.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934370.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1413254
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTGC	4437	0.3139563022641365	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4374	0.3094985048689054	No Hit
CTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTGCT	4257	0.30121973827776183	Illumina Single End Adapter 2 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTGC	4206	0.29761104514828896	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGC	3993	0.2825394444310789	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCG	3609	0.25536810792681286	No Hit
GAATCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTC	3297	0.23329139701709672	No Hit
CCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTGC	2876	0.20350198902674252	Illumina Single End Adapter 2 (95% over 21bp)
GCGCGCGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC	1599	0.11314314341229531	No Hit
TCCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTG	1470	0.10401527255539343	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGTATC	20	7.033836E-4	45.000004	32
CGTCGGT	20	7.033836E-4	45.000004	11
TACGTTC	20	7.033836E-4	45.000004	31
TCGCATA	45	3.8562575E-10	45.0	25
CGCATGG	145	0.0	43.448273	2
TACTCGC	65	0.0	41.53846	45
GCCGATT	185	0.0	41.351353	9
CGTTCAT	210	0.0	40.714287	17
CGTTTTT	2290	0.0	40.578606	1
TAACGCC	50	1.0822987E-9	40.5	12
GCGCGAC	325	0.0	39.46154	9
ACACGCG	1535	0.0	38.990227	36
TTACACG	1540	0.0	38.863636	34
CGCGCAT	70	0.0	38.571426	36
TTATCCG	35	6.249309E-6	38.571426	1
ACGTCGA	35	6.249309E-6	38.571426	16
TCATACG	70	0.0	38.571426	31
TTGGGAC	2560	0.0	38.320316	5
TGGGCGA	1405	0.0	38.27402	6
TTGGGCA	1670	0.0	38.26347	5