SRR2934368.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934368.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2058014
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7616	0.370065509758437	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	3347	0.16263251853485933	No Hit
CCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGC	3325	0.1615635267787294	RNA PCR Primer, Index 10 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGCT	3122	0.15169964830171223	TruSeq Adapter, Index 10 (95% over 24bp)
GCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGC	2671	0.1297853173010485	RNA PCR Primer, Index 35 (95% over 24bp)
TCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGC	2192	0.10651045133803755	RNA PCR Primer, Index 35 (95% over 24bp)
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	2112	0.10262320858847414	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCAATA	20	7.034589E-4	45.0	43
CTTACGA	20	7.034589E-4	45.0	45
CGTTTTT	3780	0.0	40.714287	1
TTCGGGT	695	0.0	40.467625	4
TCCGATA	195	0.0	39.23077	14
TCGTTTG	745	0.0	38.65772	1
GGGCGAT	3375	0.0	38.6	7
TGGGCGA	2430	0.0	38.055553	6
CGTTTGG	1310	0.0	37.614502	2
TACGGGT	60	1.5643309E-10	37.500004	4
TATCGTG	30	1.1402355E-4	37.500004	1
CGTTCAT	390	0.0	37.5	17
TTTCGCG	675	0.0	37.333336	1
TTTGGGC	5275	0.0	37.27962	4
CGGGTAT	290	0.0	37.24138	6
TCGTTCA	400	0.0	37.125	16
TTTTGCG	1700	0.0	36.92647	1
TACCGGT	55	2.752131E-9	36.81818	40
TTTGGGA	8935	0.0	36.790714	4
TTGGGAC	3585	0.0	36.71548	5