##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934363.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1011855 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.21352960651477 33.0 31.0 34.0 30.0 34.0 2 32.41130695603619 34.0 31.0 34.0 30.0 34.0 3 32.47229099030988 34.0 31.0 34.0 30.0 34.0 4 35.9525070291692 37.0 35.0 37.0 35.0 37.0 5 35.922897055408136 37.0 35.0 37.0 35.0 37.0 6 35.560842215534834 37.0 35.0 37.0 33.0 37.0 7 35.886611223940186 37.0 35.0 37.0 35.0 37.0 8 35.97423741543996 37.0 35.0 37.0 35.0 37.0 9 37.73852577691468 39.0 38.0 39.0 35.0 39.0 10 37.29294414713571 39.0 37.0 39.0 34.0 39.0 11 37.196943237914525 39.0 37.0 39.0 34.0 39.0 12 36.99683353840224 39.0 37.0 39.0 33.0 39.0 13 36.89944705516107 39.0 37.0 39.0 33.0 39.0 14 38.038796072559805 40.0 37.0 41.0 33.0 41.0 15 38.10805599616546 40.0 37.0 41.0 33.0 41.0 16 38.16933750389137 40.0 37.0 41.0 33.0 41.0 17 38.11393332048564 40.0 37.0 41.0 33.0 41.0 18 38.07438911701775 40.0 37.0 41.0 33.0 41.0 19 38.08430061619501 40.0 37.0 41.0 34.0 41.0 20 38.03568297829234 40.0 37.0 41.0 34.0 41.0 21 37.91396889870584 40.0 36.0 41.0 33.0 41.0 22 37.979667047155964 40.0 36.0 41.0 33.0 41.0 23 37.93244190126055 40.0 36.0 41.0 33.0 41.0 24 37.88589175326504 40.0 36.0 41.0 33.0 41.0 25 37.78256766038612 40.0 36.0 41.0 33.0 41.0 26 37.69249744281542 40.0 36.0 41.0 33.0 41.0 27 37.61697575245465 40.0 36.0 41.0 33.0 41.0 28 37.49767308557056 39.0 36.0 41.0 33.0 41.0 29 37.40916929797253 39.0 35.0 41.0 33.0 41.0 30 37.39403471841321 39.0 36.0 41.0 32.0 41.0 31 37.335954262221364 39.0 35.0 41.0 32.0 41.0 32 37.21799170829813 39.0 35.0 41.0 32.0 41.0 33 37.178828982413485 39.0 35.0 41.0 32.0 41.0 34 37.045212999886346 39.0 35.0 41.0 31.0 41.0 35 36.9485845303922 39.0 35.0 41.0 31.0 41.0 36 36.81801048569212 39.0 35.0 41.0 31.0 41.0 37 36.80082422876796 39.0 35.0 41.0 31.0 41.0 38 36.736825928616256 39.0 35.0 41.0 31.0 41.0 39 36.70117655197632 39.0 35.0 41.0 31.0 41.0 40 36.58080851505404 39.0 35.0 41.0 30.0 41.0 41 36.500852394858946 39.0 35.0 40.0 30.0 41.0 42 36.46234490119632 39.0 35.0 40.0 30.0 41.0 43 36.38675798409851 39.0 35.0 40.0 30.0 41.0 44 36.22463692920428 38.0 35.0 40.0 30.0 41.0 45 36.224128951282545 38.0 35.0 40.0 30.0 41.0 46 36.12431623108054 38.0 35.0 40.0 30.0 41.0 47 35.94937911064332 38.0 35.0 40.0 30.0 41.0 48 35.86821234267756 38.0 35.0 40.0 29.0 41.0 49 35.8732802624882 38.0 35.0 40.0 29.0 41.0 50 35.77975302785478 38.0 35.0 40.0 29.0 41.0 51 34.87750715270469 37.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 6.0 9 13.0 10 27.0 11 32.0 12 23.0 13 22.0 14 29.0 15 47.0 16 79.0 17 121.0 18 231.0 19 396.0 20 707.0 21 1005.0 22 1603.0 23 2456.0 24 3610.0 25 5170.0 26 7242.0 27 9081.0 28 10578.0 29 12928.0 30 16315.0 31 20815.0 32 27645.0 33 39066.0 34 66918.0 35 82503.0 36 84133.0 37 126558.0 38 215391.0 39 276993.0 40 112.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.375033972258873 4.916218232849568 53.41644800885502 17.292299786036537 2 21.133067484965732 4.5174456814464525 52.95215223525109 21.397334598336716 3 21.917863725533795 4.666083579168952 51.221172994154294 22.19487970114295 4 20.38572720399662 5.386542538209526 48.353864931240146 25.87386532655371 5 17.58838964080822 6.112931200616689 49.60107920601272 26.697599952562374 6 21.990601420163955 6.679613185683719 52.58935321760529 18.740432176547035 7 83.26687124143281 2.6257714791150906 9.39442904368709 4.7129282357650055 8 84.43087201229426 3.253727065636875 7.712073370196322 4.603327551872551 9 78.37387768010238 5.874260640111478 9.941147694086604 5.810713985699532 10 38.44938256963695 29.449278799828036 17.399528588582356 14.701810041952651 11 28.864610047882355 26.13487110307307 25.913297853941526 19.087220995103053 12 29.193510927949163 20.673416645665636 29.998962301910847 20.134110124474354 13 25.2108256617796 22.51617079522264 30.76043504257033 21.51256850042743 14 20.837175286972936 26.433629324359714 29.611752672072576 23.11744271659477 15 17.68939225481912 26.086741677414256 34.76318247179685 21.46068359596978 16 21.08533337286469 23.70764585834927 33.88924302395106 21.31777774483498 17 20.99035929060982 23.76822766107792 29.77887147862095 25.46254156969131 18 22.333140617973918 24.55440749909819 30.17250495377302 22.93994692915487 19 23.462057310583038 26.574262122537316 29.286706099194053 20.67697446768559 20 26.6452209061575 25.32517010836533 28.481551210400703 19.54805777507647 21 26.00540591290254 25.1611149818897 28.712513156529347 20.120965948678418 22 22.841612681658933 24.78576475878461 27.83037095235977 24.542251607196683 23 22.90170034244037 26.145544569132927 27.998972184749793 22.95378290367691 24 23.75745536662862 24.071630816668396 28.532546659353365 23.63836715734962 25 23.145905292754396 25.318845091440966 27.03183756565911 24.503412050145528 26 21.478176220901215 28.812231001477485 26.734067628266896 22.975525149354404 27 20.809602166318296 28.418696354714857 28.33983129993922 22.431870179027626 28 19.727035988358015 27.675506866102356 30.29722638125028 22.30023076428935 29 20.57864022018965 26.42710665065647 29.56194316379323 23.43230996536065 30 21.83395842289656 26.093956149843606 29.146172129405894 22.925913297853942 31 22.61322027365581 27.317945753097035 27.451858220792502 22.61697575245465 32 22.865726808683064 28.140296781653497 27.22494823863103 21.76902817103241 33 23.44772719411378 26.244570615354966 26.766779825172577 23.540922365358675 34 21.475310197607364 25.88434113583468 28.909181651521216 23.73116701503674 35 20.449866828745225 25.737778634290486 28.585518676094896 25.226835860869397 36 20.9445029179082 28.248019726146534 27.087082635357834 23.720394720587436 37 21.48519303655168 28.72298896581032 28.710338931961594 21.081479065676405 38 21.184655904255056 26.435012921811918 28.842274831868203 23.538056342064824 39 21.35315830825563 23.375681298209724 29.762762451141718 25.50839794239293 40 21.47451957049182 23.845412633233025 31.329093595426222 23.35097420084894 41 19.18595055615676 25.054973291627753 31.177095532462655 24.58198061975283 42 20.862870668228155 25.93296470344071 27.433772625524412 25.770392002806723 43 21.61712893645829 25.612068922918795 27.62549970104412 25.145302439578792 44 22.161772190679493 24.950906997544113 27.94145406209388 24.945866749682512 45 21.276368649658302 24.53651956060898 27.953609953995382 26.233501835737332 46 21.253638120086375 25.695183598440487 28.896926931230265 24.15425135024287 47 19.96392763785325 26.125482406075967 30.36561562674494 23.544974329325843 48 19.746999323025534 24.058387812483016 31.237578506801867 24.95703435768959 49 20.514500595441046 23.369553938064247 31.106235577231917 25.009709889262787 50 19.665268244956046 22.648996150634233 31.554422323356608 26.131313281053114 51 18.39344570121213 23.196900741707065 29.45026708372247 28.95938647335834 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 256.0 1 1108.0 2 1960.0 3 3478.0 4 4996.0 5 3474.5 6 1953.0 7 1947.0 8 1941.0 9 2005.0 10 2069.0 11 2060.0 12 2051.0 13 1877.5 14 1704.0 15 1815.5 16 1927.0 17 1912.0 18 1897.0 19 2322.5 20 2748.0 21 3115.0 22 3482.0 23 4052.0 24 4622.0 25 6068.0 26 8416.0 27 9318.0 28 11603.5 29 13889.0 30 15866.5 31 17844.0 32 19745.0 33 21646.0 34 24902.0 35 28158.0 36 30983.5 37 33809.0 38 37759.5 39 41710.0 40 45896.5 41 50083.0 42 57970.0 43 65857.0 44 72558.5 45 79260.0 46 88666.0 47 98072.0 48 97627.0 49 97182.0 50 86212.0 51 75242.0 52 68376.5 53 61511.0 54 55681.5 55 49852.0 56 49078.0 57 48304.0 58 47573.0 59 46842.0 60 43743.5 61 40645.0 62 36743.0 63 32841.0 64 27479.0 65 22117.0 66 17934.5 67 13752.0 68 11462.0 69 9172.0 70 7473.0 71 5774.0 72 4870.5 73 3967.0 74 3396.0 75 2118.5 76 1412.0 77 1132.5 78 853.0 79 598.5 80 344.0 81 309.0 82 274.0 83 175.5 84 77.0 85 76.0 86 75.0 87 47.5 88 20.0 89 11.5 90 3.0 91 2.5 92 2.0 93 2.5 94 3.0 95 1.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1011855.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.34896193516551 #Duplication Level Percentage of deduplicated Percentage of total 1 70.66320041643057 17.9123877757307 2 11.903761141292406 6.03495976111847 3 4.921995141446322 3.743024024567771 4 2.5209844472216973 2.5561735516706823 5 1.5643267598331394 1.9827029744585525 6 1.0214604323610366 1.5535776970918567 7 0.6800193000020057 1.2066448345650116 8 0.5024110690022844 1.0188479251155773 9 0.38837883755928865 0.8860500332742813 >10 4.037528655448122 25.396108223794418 >50 1.5974358546980254 27.89468028221187 >100 0.1906210421374587 7.335923685252103 >500 0.005513831797364503 0.8664736209077702 >1k 0.0023630707702990725 1.612445610240972 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTTCTGCT 3472 0.3431321681466218 TruSeq Adapter, Index 23 (96% over 26bp) TCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTTCTGC 3317 0.32781376778293336 Illumina PCR Primer Index 7 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTTCTGC 2840 0.2806726260185501 Illumina PCR Primer Index 7 (95% over 23bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2827 0.27938785695578916 No Hit GCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTTCTGC 2608 0.25774443966773897 Illumina PCR Primer Index 7 (95% over 23bp) TCCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTTCTG 1087 0.10742645932470563 TruSeq Adapter, Index 23 (95% over 24bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.964851683294543E-4 0.0 0.0 0.3716935726956926 0.0 2 2.964851683294543E-4 0.0 0.0 1.3361598252714075 0.0 3 2.964851683294543E-4 0.0 0.0 1.8799136239876266 0.0 4 2.964851683294543E-4 0.0 0.0 2.498776998680641 0.0 5 2.964851683294543E-4 0.0 0.0 3.538253998843708 0.0 6 2.964851683294543E-4 0.0 0.0 4.215129638139852 0.0 7 2.964851683294543E-4 0.0 0.0 4.784381161332404 0.0 8 2.964851683294543E-4 0.0 0.0 5.684510132380628 0.0 9 2.964851683294543E-4 0.0 0.0 6.121331613719357 0.0 10 2.964851683294543E-4 0.0 0.0 6.966413171847745 0.0 11 2.964851683294543E-4 0.0 0.0 8.548556858443156 0.0 12 2.964851683294543E-4 0.0 0.0 9.911499177253658 0.0 13 2.964851683294543E-4 0.0 0.0 10.378660974151435 0.0 14 3.953135577726058E-4 0.0 0.0 10.541134846395975 0.0 15 3.953135577726058E-4 0.0 0.0 10.812418775417427 0.0 16 4.941419472157572E-4 0.0 0.0 11.443833355569721 0.0 17 5.929703366589086E-4 0.0 0.0 12.29929189458964 0.0 18 6.917987261020601E-4 0.0 0.0 13.333827475280549 0.0 19 7.906271155452115E-4 0.0 0.0 13.980758112575419 0.0 20 7.906271155452115E-4 0.0 0.0 14.657040781534903 0.0 21 7.906271155452115E-4 0.0 0.0 15.582766305448903 0.0 22 7.906271155452115E-4 0.0 0.0 16.54663958768796 0.0 23 7.906271155452115E-4 0.0 0.0 17.427892336352542 0.0 24 8.894555049883629E-4 0.0 0.0 18.085002297760056 0.0 25 8.894555049883629E-4 0.0 0.0 18.68597773396386 0.0 26 8.894555049883629E-4 0.0 0.0 19.208384600560358 0.0 27 8.894555049883629E-4 0.0 0.0 19.74442978490001 0.0 28 8.894555049883629E-4 0.0 0.0 20.30636800727377 0.0 29 8.894555049883629E-4 0.0 0.0 20.905465704078154 0.0 30 8.894555049883629E-4 0.0 0.0 21.526107989781146 0.0 31 8.894555049883629E-4 0.0 0.0 22.157917883491212 0.0 32 8.894555049883629E-4 0.0 0.0 22.778955482751975 0.0 33 8.894555049883629E-4 0.0 0.0 23.34672458010288 0.0 34 8.894555049883629E-4 0.0 0.0 23.919138611757614 0.0 35 8.894555049883629E-4 0.0 0.0 24.53899027034506 0.0 36 8.894555049883629E-4 0.0 0.0 25.14895908998819 0.0 37 8.894555049883629E-4 0.0 0.0 25.748946242297563 0.0 38 8.894555049883629E-4 0.0 0.0 26.341521265398697 0.0 39 8.894555049883629E-4 0.0 0.0 26.986771820073034 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAACGAA 20 7.0328865E-4 45.0 29 ACGTTAT 25 3.8904735E-5 45.0 35 GACGTAT 40 6.8139343E-9 45.0 38 CGTTGCA 20 7.0328865E-4 45.0 22 TAGCGAT 20 7.0328865E-4 45.0 41 CGATTCA 20 7.0328865E-4 45.0 10 ATCCGTC 25 3.8904735E-5 45.0 26 CGGATTG 20 7.0328865E-4 45.0 6 TCATGCG 40 6.8139343E-9 45.0 1 TCCGTTG 35 1.211738E-7 45.0 1 CCGACGT 40 6.8139343E-9 45.0 36 ACGTCCG 20 7.0328865E-4 45.0 25 CGGTCAA 20 7.0328865E-4 45.0 25 ACTCCCG 20 7.0328865E-4 45.0 26 GACGATA 25 3.8904735E-5 45.0 42 TAGTCCG 20 7.0328865E-4 45.0 1 TACGTTC 25 3.8904735E-5 45.0 31 AATCGTA 25 3.8904735E-5 45.0 12 AGTCGTA 20 7.0328865E-4 45.0 44 CGCATCG 30 2.1652431E-6 44.999996 21 >>END_MODULE