SRR2934358.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934358.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	762897
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	4022	0.5272009196523253	No Hit
CTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGCT	3576	0.46873955461877553	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	2584	0.33870889517195635	No Hit
GCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	2467	0.32337261779768434	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2203	0.2887676842352244	No Hit
TCCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTG	969	0.12701583568948363	No Hit
GCCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTG	822	0.10774717950129571	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATACCG	20	7.031793E-4	45.0	33
TCCGAAC	20	7.031793E-4	45.0	32
TAGCGAT	20	7.031793E-4	45.0	34
CGGCAAT	25	3.8895676E-5	45.0	12
ACTCTCG	20	7.031793E-4	45.0	16
CGCGCAT	20	7.031793E-4	45.0	40
GCGTTGC	20	7.031793E-4	45.0	14
CCGTAAG	25	3.8895676E-5	45.0	11
TGCGATC	20	7.031793E-4	45.0	44
AGCATCG	20	7.031793E-4	45.0	41
TCGTACG	100	0.0	45.0	30
CGTAAGT	20	7.031793E-4	45.0	12
ATAACGC	25	3.8895676E-5	45.0	11
CGGTAGA	25	3.8895676E-5	45.0	25
TATCGTG	25	3.8895676E-5	45.0	1
TATAACG	20	7.031793E-4	45.0	22
GTGCGAT	20	7.031793E-4	45.0	43
AAAGCGT	20	7.031793E-4	45.0	45
ATCGAGT	25	3.8895676E-5	45.0	44
AATCGAG	25	3.8895676E-5	45.0	43