SRR2934356.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934356.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1566020
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGC	9214	0.5883705188950332	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCG	8859	0.5657015874637616	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTC	7972	0.509061186958021	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4431	0.28294657794919603	No Hit
GCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGC	3270	0.20880959374720628	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAAGATGGCT	2254	0.14393175055235566	No Hit
CTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGCT	2125	0.13569430786324568	Illumina Single End Adapter 2 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGC	1866	0.11915556634014891	Illumina Single End Adapter 2 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCT	1804	0.11519648535778598	No Hit
GAACTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCT	1780	0.11366393788074225	No Hit
GCGCGCGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC	1768	0.11289766414222041	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTC	1649	0.10529878290187866	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAAGATGGCTCGTA	1577	0.10070114047074749	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGGGTA	30	2.166007E-6	45.000004	5
CCGTACA	20	7.0340704E-4	45.0	43
ACATACG	200	0.0	41.625	17
TTTACGG	160	0.0	40.78125	2
CCGATGA	910	0.0	40.054943	18
TTCGTAC	45	1.9290383E-8	40.0	33
TTTCGCG	480	0.0	39.375004	1
CTATCGG	40	3.4592995E-7	39.375	2
ACTACGG	40	3.4592995E-7	39.375	2
CGGTCTA	40	3.4592995E-7	39.375	31
TTTGGGA	6810	0.0	39.31718	4
TCGTTTG	475	0.0	39.315792	1
CGTTCAT	315	0.0	39.285713	17
TACGGAA	185	0.0	38.91892	5
TTGGGAC	2685	0.0	38.79888	5
TACGGCT	1400	0.0	38.732143	7
TCGTTGA	105	0.0	38.57143	24
ATCGACG	35	6.2497384E-6	38.57143	27
CGTTTTT	2385	0.0	38.490566	1
TTACGGG	325	0.0	38.076923	3