Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934350.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 727340 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC | 5627 | 0.7736409382132153 | TruSeq Adapter, Index 23 (95% over 22bp) |
CTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGCT | 5214 | 0.7168586905711222 | TruSeq Adapter, Index 20 (95% over 24bp) |
GCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC | 4321 | 0.5940825473643688 | TruSeq Adapter, Index 23 (95% over 22bp) |
CCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC | 3713 | 0.5104902796491325 | TruSeq Adapter, Index 23 (95% over 22bp) |
TCCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTG | 1939 | 0.2665878406247422 | TruSeq Adapter, Index 20 (95% over 22bp) |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1484 | 0.2040311271207413 | No Hit |
TTCCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCT | 1433 | 0.19701927571699618 | No Hit |
GCCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTG | 1167 | 0.16044765859158028 | TruSeq Adapter, Index 23 (95% over 21bp) |
TGCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTG | 1167 | 0.16044765859158028 | TruSeq Adapter, Index 20 (95% over 22bp) |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCC | 1000 | 0.13748728242637556 | No Hit |
TTCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTG | 823 | 0.11315203343690708 | TruSeq Adapter, Index 20 (95% over 22bp) |
TTGCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCT | 792 | 0.10888992768168944 | No Hit |
TTTCCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTC | 731 | 0.10050320345368054 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGCTAG | 55 | 1.8189894E-12 | 45.000004 | 1 |
AACGATA | 115 | 0.0 | 45.000004 | 30 |
CTTCGGC | 20 | 7.0315774E-4 | 45.0 | 17 |
CGGGTAA | 45 | 3.8380676E-10 | 45.0 | 6 |
AGCGTAG | 25 | 3.889387E-5 | 45.0 | 41 |
GAGTGCG | 45 | 3.8380676E-10 | 45.0 | 32 |
AGTCCGG | 20 | 7.0315774E-4 | 45.0 | 30 |
CCTAGGT | 25 | 3.889387E-5 | 45.0 | 13 |
TCCGACA | 20 | 7.0315774E-4 | 45.0 | 15 |
TTGCTAG | 40 | 6.8084773E-9 | 45.0 | 1 |
GGCGTCA | 45 | 3.8380676E-10 | 45.0 | 36 |
TTCACGG | 35 | 1.2111013E-7 | 45.0 | 2 |
TCCCTCC | 20 | 7.0315774E-4 | 45.0 | 16 |
TTCCGCG | 90 | 0.0 | 45.0 | 1 |
CACGAGC | 20 | 7.0315774E-4 | 45.0 | 41 |
CGACACA | 20 | 7.0315774E-4 | 45.0 | 17 |
TAGCCGA | 20 | 7.0315774E-4 | 45.0 | 45 |
TCCTACG | 25 | 3.889387E-5 | 45.0 | 20 |
TCGGCAG | 20 | 7.0315774E-4 | 45.0 | 19 |
AGTATCC | 20 | 7.0315774E-4 | 45.0 | 17 |