##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934350.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 727340 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.87189759947205 31.0 31.0 34.0 30.0 34.0 2 32.05655539362609 33.0 31.0 34.0 30.0 34.0 3 32.12397778205516 33.0 31.0 34.0 30.0 34.0 4 35.70923364588776 37.0 35.0 37.0 35.0 37.0 5 35.698366651084775 37.0 35.0 37.0 35.0 37.0 6 35.38686034041851 37.0 35.0 37.0 33.0 37.0 7 35.79227596447328 37.0 35.0 37.0 35.0 37.0 8 35.895515164847254 37.0 35.0 37.0 35.0 37.0 9 37.69828828333379 39.0 38.0 39.0 35.0 39.0 10 36.93644925344405 39.0 37.0 39.0 33.0 39.0 11 36.79804355597107 39.0 37.0 39.0 32.0 39.0 12 36.727207358319355 39.0 35.0 39.0 32.0 39.0 13 36.64962190997333 39.0 35.0 39.0 32.0 39.0 14 37.700904666318365 39.0 37.0 41.0 33.0 41.0 15 37.72334396568318 39.0 37.0 41.0 33.0 41.0 16 37.76755162647455 39.0 37.0 41.0 33.0 41.0 17 37.725710121813734 39.0 36.0 41.0 33.0 41.0 18 37.70625292160475 39.0 36.0 41.0 33.0 41.0 19 37.743777325597385 39.0 37.0 41.0 33.0 41.0 20 37.72093106387659 39.0 36.0 41.0 33.0 41.0 21 37.547698462892185 39.0 36.0 41.0 32.0 41.0 22 37.65941650397338 39.0 36.0 41.0 33.0 41.0 23 37.60653064591525 39.0 36.0 41.0 33.0 41.0 24 37.56300354717189 39.0 36.0 41.0 33.0 41.0 25 37.490595869882036 39.0 36.0 41.0 32.0 41.0 26 37.43507988011109 39.0 36.0 40.0 32.0 41.0 27 37.35483130310446 39.0 36.0 40.0 32.0 41.0 28 37.22924079522644 39.0 36.0 40.0 32.0 41.0 29 37.20273049742899 39.0 36.0 40.0 32.0 41.0 30 37.17987048697996 39.0 36.0 40.0 31.0 41.0 31 37.10216267495257 39.0 35.0 40.0 31.0 41.0 32 37.00883218302307 39.0 35.0 40.0 31.0 41.0 33 36.96603651662221 39.0 35.0 40.0 31.0 41.0 34 36.86617812852311 39.0 35.0 40.0 31.0 41.0 35 36.82654466961806 39.0 35.0 40.0 31.0 41.0 36 36.58310693760827 39.0 35.0 40.0 30.0 41.0 37 36.48325129925482 39.0 35.0 40.0 30.0 41.0 38 36.41274644595375 39.0 35.0 40.0 30.0 41.0 39 36.34982951576979 39.0 35.0 40.0 30.0 41.0 40 36.2791308054005 39.0 35.0 40.0 30.0 41.0 41 36.229580388814036 39.0 35.0 40.0 29.0 41.0 42 36.10600819424203 38.0 35.0 40.0 29.0 41.0 43 35.9577116616713 38.0 35.0 40.0 28.0 41.0 44 35.77627794429015 38.0 35.0 40.0 28.0 41.0 45 35.81313416009019 38.0 35.0 40.0 28.0 41.0 46 35.628903951384494 38.0 34.0 40.0 28.0 41.0 47 35.31308328979569 38.0 34.0 40.0 27.0 41.0 48 35.19169989275992 38.0 34.0 40.0 26.0 41.0 49 35.135365853658534 38.0 34.0 40.0 27.0 41.0 50 34.92227568949872 37.0 34.0 40.0 26.0 41.0 51 33.85001512360107 36.0 32.0 39.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 3.0 11 6.0 12 4.0 13 1.0 14 7.0 15 10.0 16 23.0 17 47.0 18 93.0 19 218.0 20 368.0 21 681.0 22 1149.0 23 1807.0 24 2905.0 25 4425.0 26 6002.0 27 7460.0 28 9037.0 29 11424.0 30 14260.0 31 18337.0 32 23865.0 33 31685.0 34 47383.0 35 61279.0 36 71681.0 37 106075.0 38 167998.0 39 139072.0 40 33.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.532598234663293 4.650919789919432 61.66222124453488 10.154260730882394 2 20.09899084334699 3.990705859707977 54.2394203536173 21.670882943327744 3 19.2827288475816 3.7705887205433495 55.04660818874254 21.90007424313251 4 17.59919707427063 4.4725987846124236 53.75079055187395 24.177413589242995 5 16.317403140209528 4.885610581021256 55.76195451920697 23.03503175956224 6 19.142904281353974 5.614705639728325 58.16921934721039 17.073170731707318 7 82.26867764731762 1.1348200291473038 11.138807160337668 5.457695163197404 8 84.38639425853108 1.294855225891605 8.123711056727252 6.195039458850057 9 79.99628784337449 3.454642945527539 11.13303269447576 5.416036516622212 10 36.17359144279154 26.956444028927322 20.12635081254984 16.743613715731296 11 24.79294415266588 28.15492066983804 27.058872054334977 19.993263123161107 12 21.959743723705557 24.89908433469904 32.810377540077546 20.33079440151786 13 22.95391426293068 26.796408832183022 33.19025490142162 17.05942200346468 14 20.399125580883766 28.941622899881757 30.232628481865426 20.426623037369044 15 17.0991558280859 29.12736821843979 33.95317183160558 19.820304121868727 16 18.533148183793 27.831963043418483 30.529738499188824 23.10515027359969 17 20.025572634531304 28.667335771441145 26.80892017488382 24.49817141914373 18 20.29697253004097 27.06780872769269 31.438116974179884 21.19710176808645 19 20.604531580828773 30.836610113564493 28.553908763439384 20.00494954216735 20 22.695713146533947 29.73451205763467 28.324717463634613 19.245057332196772 21 21.711854153490805 30.417273902164048 28.99964253306569 18.871229411279455 22 20.22190447383617 27.90373140484505 26.848928974069896 25.02543514724888 23 19.27626694530756 29.26678032282014 26.40841972117579 25.04853301069651 24 20.255863832595487 28.212252866609838 27.92724173013996 23.604641570654714 25 18.83699507795529 29.687353919762423 26.518684521681745 24.956966480600546 26 20.28074903071466 30.24197761707042 27.796903786399756 21.680369565815163 27 21.679819616685457 29.282453873016745 28.02100805675475 21.01671845354305 28 18.880853521049303 28.7103692908406 28.820359116781695 23.5884180713284 29 19.914070448483514 26.125333406659884 27.85561085599582 26.10498528886078 30 22.51794209035664 28.158082877333847 26.338301207138336 22.985673825171173 31 19.14606648884978 32.13792724173014 25.916490224654222 22.79951604476586 32 19.272142326834768 31.40704484835153 25.30467181785685 24.016141006956857 33 19.30087716886188 29.951604476585914 25.877306349162705 24.870212005389504 34 16.883575769241347 28.96774548354277 28.42728297632469 25.721395770891192 35 20.38042731047378 25.716446228723843 26.88412571837105 27.019000742431327 36 23.622102455522864 29.04405092528941 25.62432974949817 21.709516869689555 37 18.43223251849204 31.42973024995188 28.1432342508318 21.99480298072428 38 15.963648362526467 32.0386614238183 26.296367585998293 25.701322627656943 39 17.116204251106772 28.00437209558116 28.856518272059834 26.022905381252233 40 19.358759314763386 25.299997250254354 31.118459042538564 24.2227843924437 41 19.313938460692388 26.90529875986471 29.17218907251079 24.60857370693211 42 20.857920642340584 29.354084747160886 26.873401710341792 22.914592900156734 43 21.129045563285395 28.751203013721234 26.548656749250693 23.571094673742678 44 19.671405395000964 26.995215442571563 24.483047818076827 28.85033134435065 45 21.371985591332802 24.998212665328456 24.494459262518216 29.135342480820526 46 22.364506283168804 25.20650589820442 28.02815739544092 24.400830423185855 47 18.347402865234965 27.292875409024663 30.73583193554596 23.623889790194408 48 18.608491214562655 26.258558583331045 29.85811312453598 25.27483707757032 49 20.321445266312864 25.1845079330162 29.479335661451316 25.01471113921962 50 19.532268265185472 23.47127890670113 27.94786482250392 29.04858800560948 51 18.17238155470619 23.12989798443644 26.431655071905848 32.26606538895152 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 68.0 1 188.5 2 309.0 3 1232.5 4 2156.0 5 1567.0 6 978.0 7 1021.5 8 1065.0 9 1347.5 10 1630.0 11 1719.0 12 1808.0 13 1986.5 14 2165.0 15 2161.0 16 2157.0 17 2163.0 18 2169.0 19 2215.0 20 2261.0 21 2523.0 22 2785.0 23 2922.0 24 3059.0 25 3572.0 26 4527.5 27 4970.0 28 5866.0 29 6762.0 30 7753.0 31 8744.0 32 10811.0 33 12878.0 34 16496.0 35 20114.0 36 22648.5 37 25183.0 38 27309.0 39 29435.0 40 34734.5 41 40034.0 42 44327.0 43 48620.0 44 56808.5 45 64997.0 46 76657.0 47 88317.0 48 101375.0 49 114433.0 50 105260.0 51 96087.0 52 77000.0 53 57913.0 54 45890.5 55 33868.0 56 27027.0 57 20186.0 58 15696.5 59 11207.0 60 9163.0 61 7119.0 62 5650.5 63 4182.0 64 3241.0 65 2300.0 66 1786.5 67 1273.0 68 1052.0 69 831.0 70 709.5 71 588.0 72 400.5 73 213.0 74 212.5 75 160.0 76 108.0 77 72.5 78 37.0 79 28.0 80 19.0 81 14.0 82 9.0 83 7.0 84 5.0 85 3.0 86 1.0 87 0.5 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 727340.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.03242097303357 #Duplication Level Percentage of deduplicated Percentage of total 1 71.27822945274671 27.108836287593423 2 13.401437978303521 10.193782616696785 3 5.278430999998811 6.022545296071959 4 2.6107223108299165 3.9716835987669743 5 1.5046882130091697 2.861346777516317 6 0.9763900960436969 2.228068749998073 7 0.6842117342282582 1.8215560097600934 8 0.5267701509183208 1.6027475308603198 9 0.3901965455956574 1.3356107355885778 >10 2.9055671199287083 22.415399250097 >50 0.3404271173188153 8.534545392847033 >100 0.0945630850896301 6.994290699926134 >500 0.005091858427903139 1.3041328359881232 >1k 0.0025459292139515693 2.1058674475056414 >5k 7.274083468433055E-4 1.499586770783543 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC 5627 0.7736409382132153 TruSeq Adapter, Index 23 (95% over 22bp) CTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGCT 5214 0.7168586905711222 TruSeq Adapter, Index 20 (95% over 24bp) GCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC 4321 0.5940825473643688 TruSeq Adapter, Index 23 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC 3713 0.5104902796491325 TruSeq Adapter, Index 23 (95% over 22bp) TCCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTG 1939 0.2665878406247422 TruSeq Adapter, Index 20 (95% over 22bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1484 0.2040311271207413 No Hit TTCCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCT 1433 0.19701927571699618 No Hit GCCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTG 1167 0.16044765859158028 TruSeq Adapter, Index 23 (95% over 21bp) TGCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTG 1167 0.16044765859158028 TruSeq Adapter, Index 20 (95% over 22bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCC 1000 0.13748728242637556 No Hit TTCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTG 823 0.11315203343690708 TruSeq Adapter, Index 20 (95% over 22bp) TTGCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCT 792 0.10888992768168944 No Hit TTTCCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTC 731 0.10050320345368054 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.7937140814474661 0.0 2 0.0 0.0 0.0 2.937140814474661 0.0 3 0.0 0.0 0.0 4.151703467429263 0.0 4 0.0 0.0 0.0 5.609481122996123 0.0 5 0.0 0.0 0.0 7.765006736876839 0.0 6 0.0 0.0 0.0 9.164489784694915 0.0 7 0.0 0.0 0.0 10.300272224819205 0.0 8 0.0 0.0 0.0 12.210383039568839 0.0 9 0.0 0.0 0.0 12.974949817141914 0.0 10 0.0 0.0 0.0 14.834877773805923 0.0 11 0.0 0.0 0.0 18.441856628261885 0.0 12 0.0 0.0 0.0 21.01080650039871 0.0 13 0.0 0.0 0.0 21.85869057112217 0.0 14 0.0 0.0 0.0 22.096406082437376 0.0 15 0.0 0.0 0.0 22.487144939093135 0.0 16 0.0 0.0 0.0 23.662248741991366 0.0 17 0.0 0.0 0.0 25.529326037341544 0.0 18 0.0 0.0 0.0 27.53897764456788 0.0 19 0.0 0.0 0.0 28.850881293480352 0.0 20 0.0 0.0 0.0 30.087441911623173 0.0 21 0.0 0.0 0.0 32.03467429262793 0.0 22 0.0 0.0 0.0 34.06756125058432 0.0 23 0.0 0.0 0.0 36.26914510407787 0.0 24 0.0 0.0 0.0 37.75524513982457 0.0 25 0.0 0.0 0.0 39.06426155580609 0.0 26 0.0 0.0 0.0 40.16897187010201 0.0 27 0.0 0.0 0.0 41.25168421920972 0.0 28 0.0 0.0 0.0 42.44012428850331 0.0 29 0.0 0.0 0.0 43.735117001677345 0.0 30 0.0 0.0 0.0 45.03602166799571 0.0 31 0.0 0.0 0.0 46.321665245964745 0.0 32 0.0 0.0 0.0 47.43558720818324 0.0 33 0.0 0.0 0.0 48.510187807627794 0.0 34 0.0 0.0 0.0 49.51906948607254 0.0 35 0.0 0.0 0.0 50.60095691148569 0.0 36 0.0 0.0 0.0 51.65548436769599 0.0 37 1.3748728242637555E-4 0.0 0.0 52.66134132592735 0.0 38 1.3748728242637555E-4 0.0 0.0 53.64038826408557 0.0 39 1.3748728242637555E-4 0.0 0.0 54.678554733687136 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCTAG 55 1.8189894E-12 45.000004 1 AACGATA 115 0.0 45.000004 30 CTTCGGC 20 7.0315774E-4 45.0 17 CGGGTAA 45 3.8380676E-10 45.0 6 AGCGTAG 25 3.889387E-5 45.0 41 GAGTGCG 45 3.8380676E-10 45.0 32 AGTCCGG 20 7.0315774E-4 45.0 30 CCTAGGT 25 3.889387E-5 45.0 13 TCCGACA 20 7.0315774E-4 45.0 15 TTGCTAG 40 6.8084773E-9 45.0 1 GGCGTCA 45 3.8380676E-10 45.0 36 TTCACGG 35 1.2111013E-7 45.0 2 TCCCTCC 20 7.0315774E-4 45.0 16 TTCCGCG 90 0.0 45.0 1 CACGAGC 20 7.0315774E-4 45.0 41 CGACACA 20 7.0315774E-4 45.0 17 TAGCCGA 20 7.0315774E-4 45.0 45 TCCTACG 25 3.889387E-5 45.0 20 TCGGCAG 20 7.0315774E-4 45.0 19 AGTATCC 20 7.0315774E-4 45.0 17 >>END_MODULE