SRR2934347.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934347.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	793412
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGC	4018	0.5064203717614556	No Hit
CTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGCT	4003	0.5045298029271047	Illumina Single End Adapter 1 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGC	3734	0.47062560183107893	No Hit
CCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGC	2420	0.3050117719419419	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2246	0.28308117346347167	No Hit
TCCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTG	1270	0.16006816130837445	No Hit
GCCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTG	894	0.11267790252731241	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	893	0.11255186460502235	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	893	0.11255186460502235	No Hit
TGCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTG	874	0.11015714408151124	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGGAT	20	7.0319645E-4	45.0	40
AACCGTT	20	7.0319645E-4	45.0	11
GTCGCAA	20	7.0319645E-4	45.0	31
CAAACGC	25	3.8897102E-5	45.0	13
CTCGTTA	20	7.0319645E-4	45.0	24
GATCGGT	20	7.0319645E-4	45.0	34
GCGAATT	20	7.0319645E-4	45.0	43
CGTGATA	20	7.0319645E-4	45.0	23
CGGTTGA	35	1.2112832E-7	45.0	31
GCGCCTA	25	3.8897102E-5	45.0	29
CACGAAC	25	3.8897102E-5	45.0	12
CCGCTCG	20	7.0319645E-4	45.0	15
TAGCCGT	25	3.8897102E-5	45.0	44
CCGTCGA	25	3.8897102E-5	45.0	13
CGTTAAT	20	7.0319645E-4	45.0	26
GTATGCG	25	3.8897102E-5	45.0	9
TACGACG	20	7.0319645E-4	45.0	35
AGCGCTA	20	7.0319645E-4	45.0	10
TACTCCG	20	7.0319645E-4	45.0	45
GGACCGT	20	7.0319645E-4	45.0	8