SRR2934346.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934346.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	717717
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTGCT	4017	0.5596913546704342	TruSeq Adapter, Index 14 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTGC	3969	0.5530034818737748	TruSeq Adapter, Index 15 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTGC	3418	0.47623227539545526	TruSeq Adapter, Index 15 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTGC	2690	0.3747995379794543	TruSeq Adapter, Index 15 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2036	0.2836772711249699	No Hit
TCCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTG	1193	0.16622150513363904	No Hit
GCCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTG	940	0.1309708422679134	No Hit
TGCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTG	881	0.12275033195535288	No Hit
TTCCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCT	770	0.10728462611307799	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGTC	20	7.0315145E-4	45.0	10
TACCACG	25	3.889336E-5	45.0	12
CACGGAT	20	7.0315145E-4	45.0	6
ACGTTGT	25	3.889336E-5	45.0	25
CGACGAA	20	7.0315145E-4	45.0	36
TCCGACC	20	7.0315145E-4	45.0	29
ACCGCAA	25	3.889336E-5	45.0	18
TTGTCGT	20	7.0315145E-4	45.0	26
TTGTCGA	20	7.0315145E-4	45.0	29
GATCCGA	20	7.0315145E-4	45.0	9
CGACCGG	35	1.2110831E-7	45.0	19
TTCGTCG	40	6.8084773E-9	45.0	1
AAGGTAG	20	7.0315145E-4	45.0	25
CAATTCG	20	7.0315145E-4	45.0	15
TACGGGA	40	6.8084773E-9	45.0	4
TAACGCG	40	6.8084773E-9	45.0	2
GCGTTAC	20	7.0315145E-4	45.0	21
CGTAGTT	20	7.0315145E-4	45.0	42
CTACGTC	25	3.889336E-5	45.0	10
TCGCTTA	25	3.889336E-5	45.0	35