SRR2934343.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934343.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	613069
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC	1753	0.28593845064748014	No Hit
CTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGCT	1718	0.2802294684611357	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC	1689	0.27549916893530746	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1648	0.26881150408844684	No Hit
GCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC	1396	0.22770683234676686	No Hit
GGGCTGGGCAGTTTCCTTTACCTGTAACTCCACTTTGTTTACAACTGAGGA	645	0.10520838600549041	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAT	85	0.0	45.000004	6
AAGTAGC	25	3.8886676E-5	45.000004	19
CCTGTCG	25	3.8886676E-5	45.000004	1
CCGTATG	25	3.8886676E-5	45.000004	35
TGCGCTC	25	3.8886676E-5	45.000004	13
CCCCGTA	25	3.8886676E-5	45.000004	22
CGTGTGA	25	3.8886676E-5	45.000004	12
GCTACGA	85	0.0	45.000004	10
GGCGAAG	25	3.8886676E-5	45.000004	42
TGTCGTG	25	3.8886676E-5	45.000004	1
CCCGCGA	25	3.8886676E-5	45.000004	28
CCCGACA	25	3.8886676E-5	45.000004	33
TTCTACG	20	7.0307084E-4	45.0	1
AACGTCC	20	7.0307084E-4	45.0	22
CGTATTA	20	7.0307084E-4	45.0	25
GTATTCG	20	7.0307084E-4	45.0	38
ACGCAGT	40	6.8066583E-9	45.0	19
GTTTACG	20	7.0307084E-4	45.0	1
TCGATAC	20	7.0307084E-4	45.0	25
CCTCGCG	20	7.0307084E-4	45.0	1