SRR2934341.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934341.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1320757
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3367	0.25492955933604744	No Hit
GCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC	3192	0.24167958223957928	No Hit
CCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC	3175	0.24039244160735093	No Hit
CTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGCT	3118	0.23607673478164415	TruSeq Adapter, Index 27 (95% over 23bp)
TCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC	3085	0.23357816767202444	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCG	2107	0.15952972424147668	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGC	1944	0.14718831700305204	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTC	1766	0.133711197442073	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1457	0.11031552359745207	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGATA	20	7.033668E-4	45.000004	43
ACTCGAT	20	7.033668E-4	45.000004	19
TCGTACT	20	7.033668E-4	45.000004	15
ACCGCGT	25	3.8911236E-5	45.0	23
ATTACGT	35	1.21212E-7	45.0	23
CTACGAT	25	3.8911236E-5	45.0	19
ACGGATC	25	3.8911236E-5	45.0	18
CGCGCAT	70	0.0	41.785713	36
GCCGATA	70	0.0	41.785713	9
CGTTCAT	260	0.0	41.53846	17
TCGTTCA	250	0.0	41.399998	16
CGTTTGG	860	0.0	40.552326	2
CGAACGA	95	0.0	40.263157	22
AAGTACG	45	1.9286745E-8	40.0	33
CGCGGAT	40	3.4587356E-7	39.375004	39
TTTGTCG	320	0.0	39.375004	1
CTTTGCG	570	0.0	39.07895	1
TTGGGAT	3325	0.0	39.04511	5
TGGGACG	300	0.0	39.0	6
CGGTAGT	255	0.0	38.82353	12