##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934341.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1320757 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.22423352668205 33.0 31.0 34.0 30.0 34.0 2 32.41257627254673 34.0 31.0 34.0 30.0 34.0 3 32.48257022298576 34.0 31.0 34.0 30.0 34.0 4 35.958345100574896 37.0 35.0 37.0 35.0 37.0 5 35.92057812300067 37.0 35.0 37.0 35.0 37.0 6 35.52356413783913 37.0 35.0 37.0 33.0 37.0 7 35.861154625718434 37.0 35.0 37.0 35.0 37.0 8 35.94103230192988 37.0 35.0 37.0 35.0 37.0 9 37.72353809216987 39.0 38.0 39.0 35.0 39.0 10 37.28867460100533 39.0 37.0 39.0 34.0 39.0 11 37.183024583628935 39.0 37.0 39.0 34.0 39.0 12 36.98083220456147 39.0 37.0 39.0 33.0 39.0 13 36.88749330876156 39.0 37.0 39.0 33.0 39.0 14 38.07846787864838 40.0 37.0 41.0 33.0 41.0 15 38.11927477953931 40.0 37.0 41.0 33.0 41.0 16 38.1629989468161 40.0 37.0 41.0 33.0 41.0 17 38.0806643462802 40.0 37.0 41.0 33.0 41.0 18 38.03293035736324 40.0 37.0 41.0 33.0 41.0 19 38.06829946765378 40.0 37.0 41.0 34.0 41.0 20 38.0101244967848 40.0 36.0 41.0 34.0 41.0 21 37.85943818582828 40.0 36.0 41.0 33.0 41.0 22 37.92402008847956 40.0 36.0 41.0 33.0 41.0 23 37.87195600704747 40.0 36.0 41.0 33.0 41.0 24 37.830785678213324 40.0 36.0 41.0 33.0 41.0 25 37.759901329313415 40.0 36.0 41.0 33.0 41.0 26 37.69163517588777 40.0 36.0 41.0 33.0 41.0 27 37.59752929569936 40.0 36.0 41.0 33.0 41.0 28 37.456027111724566 39.0 35.0 41.0 33.0 41.0 29 37.375514950895585 39.0 35.0 41.0 32.0 41.0 30 37.30144682178478 39.0 35.0 41.0 32.0 41.0 31 37.23111367193208 39.0 35.0 41.0 32.0 41.0 32 37.10939029662534 39.0 35.0 41.0 32.0 41.0 33 37.032757729090214 39.0 35.0 41.0 31.0 41.0 34 36.88510452717646 39.0 35.0 41.0 31.0 41.0 35 36.83540272737529 39.0 35.0 41.0 31.0 41.0 36 36.66893228655991 39.0 35.0 41.0 31.0 41.0 37 36.63197847900863 39.0 35.0 41.0 31.0 41.0 38 36.51554979454964 39.0 35.0 41.0 30.0 41.0 39 36.41500442549235 39.0 35.0 41.0 30.0 41.0 40 36.28175129868704 39.0 35.0 40.0 30.0 41.0 41 36.22945174623341 39.0 35.0 40.0 30.0 41.0 42 36.17600966718329 38.0 35.0 40.0 30.0 41.0 43 36.11490077281438 38.0 35.0 40.0 30.0 41.0 44 35.95523779166039 38.0 35.0 40.0 29.0 41.0 45 35.95442007878815 38.0 35.0 40.0 29.0 41.0 46 35.81458663478596 38.0 35.0 40.0 29.0 41.0 47 35.59588932710559 38.0 34.0 40.0 28.0 41.0 48 35.50552978329852 38.0 34.0 40.0 28.0 41.0 49 35.48110591123121 37.0 34.0 40.0 28.0 41.0 50 35.35905620791713 37.0 34.0 40.0 28.0 41.0 51 34.395052988551264 36.0 33.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 1.0 7 0.0 8 4.0 9 25.0 10 27.0 11 39.0 12 26.0 13 28.0 14 32.0 15 57.0 16 92.0 17 175.0 18 307.0 19 551.0 20 942.0 21 1617.0 22 2481.0 23 3665.0 24 5270.0 25 7682.0 26 10298.0 27 13074.0 28 15246.0 29 18042.0 30 22949.0 31 28374.0 32 37573.0 33 52164.0 34 89690.0 35 106778.0 36 112935.0 37 169047.0 38 276663.0 39 344785.0 40 118.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.65816421945899 4.555342125765754 52.621261897533 17.165231757242246 2 21.113346361215577 5.677501614604353 52.203925476071674 21.005226548108396 3 22.013057663143183 5.426887762094011 49.79848677690143 22.761567797861378 4 19.635784629572285 5.536900429072116 49.39038748233021 25.436927459025394 5 19.131982643287145 6.141023670516227 49.14499790650362 25.581995779693013 6 22.024339072213888 7.3863700892745605 51.824673274493335 18.76461756401821 7 83.15799196975674 2.7670495026715742 9.466616493420062 4.608342034151627 8 84.45823115077187 3.83893479269843 7.219041807084876 4.483792249444826 9 78.46765150591668 5.776990014060118 9.356376683977446 6.398981796045752 10 40.40599444106675 27.494383902564966 16.909469342202993 15.190152314165287 11 29.200375239351374 25.083190927627108 25.3564433124337 20.359990520587814 12 27.814806205834984 20.672841408374136 30.123785071742947 21.38856731404793 13 24.649878819495182 22.104141791412047 31.251623122194317 21.99435626689845 14 20.984329441373394 25.340164769143758 30.36440465581481 23.311101133668043 15 18.678757712433097 25.526345875887845 34.04744400370394 21.747452407975125 16 23.071465833609057 23.084261525776505 31.54274404754243 22.301528593072003 17 22.62020947078077 23.727377556961653 29.21627521186713 24.43613776039044 18 22.54994673509207 24.32657937834136 30.319051877067473 22.8044220094991 19 23.90432153681563 25.874025274899164 28.032105830217063 22.189547358068136 20 27.084846039051847 25.677244186477903 28.05535007575201 19.182559698718237 21 26.818786498954765 25.41868034770968 28.374409524234967 19.388123629100583 22 24.47755340308626 23.94990145802748 27.94624597863195 23.62629916025431 23 23.91954008193786 24.49845050982126 28.30081536573344 23.28119404250744 24 24.19483674892505 23.77083748183807 28.831571591140538 23.20275417809635 25 24.278273747555378 24.866724158948237 26.811366511780744 24.043635581715638 26 22.817217701666547 26.49185277836877 26.963779105467545 23.727150414497142 27 22.682900790985773 25.92376947462705 28.64311905975134 22.750210674635834 28 21.559529875669785 26.99065763043467 29.106565401508377 22.34324709238717 29 23.955882876259597 24.739448664667307 28.67226900936357 22.632399449709524 30 24.58961035224496 24.4561262972674 29.194772391893437 21.7594909585942 31 24.290085155709946 26.654486782958557 26.50820703581355 22.547221025517942 32 25.21697783922402 26.629955396791388 25.8398781910677 22.313188572916896 33 24.90253695418612 25.709498416438453 26.11615914206777 23.271805487307656 34 22.78466061508665 25.7306983797928 28.48411933459372 23.000521670526826 35 24.072406960553682 24.319007962857665 27.297375671679198 24.311209404909455 36 23.911060096596117 26.810836512696884 26.495941342729967 22.78216204797703 37 23.866085888622965 27.436992573198555 27.429951156798715 21.266970381379767 38 23.13923000218814 27.550336662989483 26.193236151691796 23.117197183130582 39 23.186324206496728 24.51215477184675 28.49456788796122 23.806953133695295 40 23.182689927064555 23.989045676078188 30.263931972346164 22.564332424511093 41 20.85447966582801 25.626137131962956 28.257885439940882 25.261497762268153 42 22.216728739654606 25.806942533713624 27.056831801762172 24.919496924869602 43 23.001278812075196 25.089550916633414 26.738832351446934 25.170337919844453 44 22.70500932419817 24.058626984373355 28.01764442664321 25.21871926478527 45 23.703300455723497 23.31791540760337 27.097868873683804 25.88091526298933 46 23.5189364886955 25.02587531241553 27.947154548489994 23.50803365039898 47 21.473821452394347 25.731758377960517 29.710915785416997 23.083504384228135 48 21.725419588917568 24.6947773133135 29.4444019603909 24.135401137378036 49 21.986633423105083 24.130706859778144 29.428577702029973 24.454082015086804 50 21.48737428611016 23.612443469919146 29.391856336934048 25.508325907036642 51 20.879162480304856 23.93945290465998 27.847287578260044 27.334097036775123 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 361.0 1 1205.5 2 2050.0 3 4323.5 4 6597.0 5 4633.5 6 2670.0 7 2656.0 8 2642.0 9 2665.0 10 2688.0 11 2732.0 12 2776.0 13 2630.0 14 2484.0 15 2630.0 16 2776.0 17 2681.0 18 2586.0 19 2760.5 20 2935.0 21 3356.0 22 3777.0 23 4718.5 24 5660.0 25 6408.5 26 9971.5 27 12786.0 28 15681.5 29 18577.0 30 19853.5 31 21130.0 32 24333.0 33 27536.0 34 29850.5 35 32165.0 36 35762.0 37 39359.0 38 42886.0 39 46413.0 40 53503.5 41 60594.0 42 65329.5 43 70065.0 44 76331.5 45 82598.0 46 93857.0 47 105116.0 48 115436.5 49 125757.0 50 119942.0 51 114127.0 52 104582.5 53 95038.0 54 86161.5 55 77285.0 56 72963.0 57 68641.0 58 67351.5 59 66062.0 60 63058.0 61 60054.0 62 54685.5 63 49317.0 64 41654.0 65 33991.0 66 27750.5 67 21510.0 68 19092.5 69 16675.0 70 13732.5 71 10790.0 72 9423.0 73 8056.0 74 6704.5 75 3807.0 76 2261.0 77 1698.0 78 1135.0 79 881.5 80 628.0 81 481.5 82 335.0 83 232.0 84 129.0 85 86.5 86 44.0 87 37.0 88 30.0 89 30.5 90 31.0 91 16.0 92 1.0 93 3.5 94 6.0 95 4.5 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1320757.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.71798328502251 #Duplication Level Percentage of deduplicated Percentage of total 1 72.70058283676397 17.97011791370526 2 11.096849395528073 5.485834757501501 3 4.36606901475628 3.237612627840013 4 2.1743470014552124 2.14981891351235 5 1.225113290049883 1.514116491285597 6 0.8124934703758993 1.2049920011964845 7 0.5595586874934174 0.9681813599115997 8 0.43040842838167703 0.851106267077688 9 0.3339385097075588 0.742885785105909 >10 4.360272197881958 27.8331328834166 >50 1.7948011443511662 29.808986010725715 >100 0.13689400484845243 5.4897796928144915 >500 0.005574868975630665 0.8867398993327616 >1k 0.0030971494309059247 1.8566953965740713 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3367 0.25492955933604744 No Hit GCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC 3192 0.24167958223957928 No Hit CCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC 3175 0.24039244160735093 No Hit CTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGCT 3118 0.23607673478164415 TruSeq Adapter, Index 27 (95% over 23bp) TCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC 3085 0.23357816767202444 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCG 2107 0.15952972424147668 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGC 1944 0.14718831700305204 No Hit GAATCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTC 1766 0.133711197442073 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 1457 0.11031552359745207 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.5142830967392184E-4 0.0 0.0 0.25977526524561295 0.0 2 1.5142830967392184E-4 0.0 0.0 1.0685538672140296 0.0 3 1.5142830967392184E-4 0.0 0.0 1.4932345616945433 0.0 4 1.5142830967392184E-4 0.0 0.0 2.009302241063269 0.0 5 1.5142830967392184E-4 0.0 0.0 2.9343020707064205 0.0 6 1.5142830967392184E-4 0.0 0.0 3.4807311261647675 0.0 7 1.5142830967392184E-4 0.0 0.0 3.983775970901536 0.0 8 1.5142830967392184E-4 0.0 0.0 4.719490413452285 0.0 9 1.5142830967392184E-4 0.0 0.0 5.066034100141056 0.0 10 1.5142830967392184E-4 0.0 0.0 5.8990412316573 0.0 11 1.5142830967392184E-4 0.0 0.0 7.167556181795743 0.0 12 1.5142830967392184E-4 0.0 0.0 8.384206935870868 0.0 13 1.5142830967392184E-4 0.0 0.0 8.754752009642955 0.0 14 1.5142830967392184E-4 0.0 0.0 8.899441759536387 0.0 15 1.5142830967392184E-4 0.0 0.0 9.140894199311456 0.0 16 1.5142830967392184E-4 0.0 0.0 9.6490118924223 0.0 17 1.5142830967392184E-4 0.0 0.0 10.338767842987014 0.0 18 1.5142830967392184E-4 0.0 0.0 11.138612174684669 0.0 19 1.5142830967392184E-4 0.0 0.0 11.687615511407474 0.0 20 1.5142830967392184E-4 0.0 0.0 12.229426003420766 0.0 21 1.5142830967392184E-4 0.0 0.0 12.951057613171841 0.0 22 1.5142830967392184E-4 0.0 0.0 13.705019167038296 0.0 23 1.5142830967392184E-4 0.0 0.0 14.412567943989696 0.0 24 2.2714246451088278E-4 0.0 0.0 15.009271198259786 0.0 25 3.028566193478437E-4 0.0 0.0 15.522310311435033 0.0 26 3.028566193478437E-4 0.0 0.0 15.977655238624516 0.0 27 3.028566193478437E-4 0.0 0.0 16.40786306640813 0.0 28 3.028566193478437E-4 0.0 0.0 16.86616084563625 0.0 29 3.028566193478437E-4 0.0 0.0 17.37268854149552 0.0 30 3.028566193478437E-4 0.0 0.0 17.917451885547454 0.0 31 3.028566193478437E-4 0.0 0.0 18.424055295561562 0.0 32 3.028566193478437E-4 0.0 0.0 18.9542815218848 0.0 33 3.028566193478437E-4 0.0 0.0 19.45702351000222 0.0 34 3.028566193478437E-4 0.0 0.0 19.963399777551814 0.0 35 3.028566193478437E-4 0.0 0.0 20.476363176572224 0.0 36 3.028566193478437E-4 0.0 0.0 21.008785113385734 0.0 37 3.028566193478437E-4 0.0 0.0 21.519477087761032 0.0 38 3.028566193478437E-4 0.0 0.0 22.039179046561934 0.0 39 3.028566193478437E-4 0.0 0.0 22.589242381452454 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTGATA 20 7.033668E-4 45.000004 43 ACTCGAT 20 7.033668E-4 45.000004 19 TCGTACT 20 7.033668E-4 45.000004 15 ACCGCGT 25 3.8911236E-5 45.0 23 ATTACGT 35 1.21212E-7 45.0 23 CTACGAT 25 3.8911236E-5 45.0 19 ACGGATC 25 3.8911236E-5 45.0 18 CGCGCAT 70 0.0 41.785713 36 GCCGATA 70 0.0 41.785713 9 CGTTCAT 260 0.0 41.53846 17 TCGTTCA 250 0.0 41.399998 16 CGTTTGG 860 0.0 40.552326 2 CGAACGA 95 0.0 40.263157 22 AAGTACG 45 1.9286745E-8 40.0 33 CGCGGAT 40 3.4587356E-7 39.375004 39 TTTGTCG 320 0.0 39.375004 1 CTTTGCG 570 0.0 39.07895 1 TTGGGAT 3325 0.0 39.04511 5 TGGGACG 300 0.0 39.0 6 CGGTAGT 255 0.0 38.82353 12 >>END_MODULE