##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934340.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 988688 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.16630726781351 33.0 31.0 34.0 30.0 34.0 2 32.3521545725244 34.0 31.0 34.0 30.0 34.0 3 32.43391949735407 34.0 31.0 34.0 30.0 34.0 4 35.93649766154743 37.0 35.0 37.0 35.0 37.0 5 35.89815695143463 37.0 35.0 37.0 35.0 37.0 6 35.525278955545126 37.0 35.0 37.0 33.0 37.0 7 35.90121959607075 37.0 35.0 37.0 35.0 37.0 8 35.98970757205509 37.0 35.0 37.0 35.0 37.0 9 37.77744040587122 39.0 38.0 39.0 35.0 39.0 10 37.24823503471267 39.0 37.0 39.0 34.0 39.0 11 37.142679996116065 39.0 37.0 39.0 34.0 39.0 12 36.958146553816775 39.0 37.0 39.0 33.0 39.0 13 36.88470781480103 39.0 37.0 39.0 33.0 39.0 14 38.04231264059036 40.0 37.0 41.0 33.0 41.0 15 38.09642677973233 40.0 37.0 41.0 33.0 41.0 16 38.11030274464745 40.0 37.0 41.0 33.0 41.0 17 38.05021098668134 40.0 37.0 41.0 33.0 41.0 18 38.04365077759617 40.0 37.0 41.0 33.0 41.0 19 38.08248507112456 40.0 37.0 41.0 34.0 41.0 20 38.04037370737786 40.0 37.0 41.0 34.0 41.0 21 37.87651008204813 40.0 36.0 41.0 33.0 41.0 22 37.95371037172495 40.0 36.0 41.0 33.0 41.0 23 37.90492046024631 40.0 36.0 41.0 33.0 41.0 24 37.863028579288915 40.0 36.0 41.0 33.0 41.0 25 37.789040627579176 40.0 36.0 41.0 33.0 41.0 26 37.69823948505494 40.0 36.0 41.0 33.0 41.0 27 37.62514059035813 39.0 36.0 41.0 33.0 41.0 28 37.469082258508244 39.0 36.0 41.0 33.0 41.0 29 37.388826404285275 39.0 36.0 41.0 32.0 41.0 30 37.36173292282297 39.0 36.0 41.0 32.0 41.0 31 37.294344626413995 39.0 35.0 41.0 32.0 41.0 32 37.16312021588206 39.0 35.0 41.0 32.0 41.0 33 37.140985831728514 39.0 35.0 41.0 32.0 41.0 34 37.01388911365365 39.0 35.0 41.0 31.0 41.0 35 36.94840030424158 39.0 35.0 41.0 31.0 41.0 36 36.78819607398896 39.0 35.0 41.0 31.0 41.0 37 36.762240464130244 39.0 35.0 41.0 31.0 41.0 38 36.68022672470992 39.0 35.0 41.0 30.0 41.0 39 36.65993720971631 39.0 35.0 41.0 30.0 41.0 40 36.59406910976971 39.0 35.0 41.0 30.0 41.0 41 36.56082100723383 39.0 35.0 41.0 30.0 41.0 42 36.49961868658262 39.0 35.0 40.0 30.0 41.0 43 36.40787488064991 39.0 35.0 40.0 30.0 41.0 44 36.23971161782079 39.0 35.0 40.0 30.0 41.0 45 36.2523849788811 38.0 35.0 40.0 30.0 41.0 46 36.14509329535708 38.0 35.0 40.0 30.0 41.0 47 35.95576562070137 38.0 35.0 40.0 29.0 41.0 48 35.872839561115335 38.0 35.0 40.0 29.0 41.0 49 35.896505267586946 38.0 35.0 40.0 29.0 41.0 50 35.81910875827359 38.0 35.0 40.0 29.0 41.0 51 34.9503240658327 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 12.0 10 17.0 11 13.0 12 18.0 13 8.0 14 18.0 15 34.0 16 46.0 17 70.0 18 161.0 19 302.0 20 585.0 21 951.0 22 1489.0 23 2278.0 24 3411.0 25 5080.0 26 6990.0 27 8916.0 28 10902.0 29 13061.0 30 16249.0 31 21238.0 32 27627.0 33 38641.0 34 65078.0 35 79997.0 36 81863.0 37 124865.0 38 212542.0 39 266134.0 40 91.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.99707895716343 5.037484019225478 52.3431052060913 16.622331817519783 2 19.40905523279336 4.772385221627045 53.292747560403285 22.525811985176315 3 21.39997653455893 5.1192084863981355 51.59817859628113 21.882636382761802 4 19.8455933519978 4.92157283187416 50.235564707976636 24.99726910815141 5 17.854874338517305 5.647383198744194 50.932953570792804 25.56478889194569 6 20.654341915750976 6.848166458984027 54.32876701244478 18.168724612820224 7 84.78690952049584 2.0923688767336106 8.715995339277912 4.404726263492629 8 85.81766947712524 2.6277248232000385 6.97985613257165 4.57474956710307 9 80.73274885504831 5.24391921415047 9.12532568413898 4.898006246662243 10 36.51910410564304 35.49067046429207 15.65893385982231 12.331291570242584 11 25.839799815513082 24.54363762885764 30.63180700079297 18.98475555483631 12 25.35855598530578 22.27244590811257 32.8596078843882 19.509390222193453 13 23.96974576408331 23.313320278996002 32.88701794701665 19.829916009904032 14 19.253192109138574 27.25541323450876 32.4807219264318 21.010672729920866 15 18.384262780573852 26.024489019791886 34.986568057870635 20.60468014176363 16 21.347988445293158 26.03976178531549 32.04114948295114 20.57110028644021 17 20.1126138883045 25.046728593853672 31.074514912692376 23.76614260514945 18 21.77087210525464 24.74066641852637 31.801943585843055 21.686517890375935 19 22.43478225688994 26.475996472092305 30.036169145372455 21.0530521256453 20 25.32790931011603 26.48327885035522 29.587594873205703 18.601216966323047 21 24.13946563526613 27.128578479763082 30.591855064489504 18.140100820481283 22 22.98015147346787 24.318086190992506 29.72100399721651 22.980758338323113 23 21.71554625928503 25.667854773194378 29.655159160422702 22.961439807097893 24 21.765916042270163 24.39182027090447 31.42862055572638 22.413643131098993 25 20.910438884663314 26.693658666839287 28.476324179114137 23.919578269383262 26 19.43100351172463 28.836093894130403 28.544191898758758 23.18871069538621 27 19.51343598789507 28.04767530302785 29.4076594436263 23.03122926545078 28 16.98321411810399 28.97385221627045 31.535529914391596 22.50740375123396 29 19.604061139611282 27.559452526985257 30.673377243377082 22.163109090026378 30 20.294976777304875 25.900789733464958 31.292480539866972 22.511752949363196 31 21.342830094023597 28.33795899211885 27.55702506756429 22.76218584629327 32 20.577472367420256 28.684681112747402 27.500687780169276 23.23715873966307 33 20.45215477481268 26.62558865890958 28.032503681646787 24.889752884630944 34 19.376992539608047 26.1584038645154 29.521952324696972 24.942651271179585 35 18.515649021733854 27.009430679850468 28.392273396663054 26.082646901752625 36 19.52092065444306 28.04413525803894 28.285970902853073 24.14897318466493 37 19.430396646869387 28.826687488874143 27.72482320003884 24.01809266421763 38 18.54811629148933 30.765519557231404 27.25966128849546 23.42670286278381 39 19.818689010082046 26.975142815529267 28.985989513375298 24.220178661013385 40 20.908517145955045 24.474859611930153 29.777745861181685 24.838877380933116 41 18.074357127830012 25.619609017202592 27.246209117537585 29.059824737429807 42 19.78035538005923 25.770617222015442 26.623565776058776 27.825461621866555 43 20.305192335701456 25.58471428802615 27.115328597090286 26.994764779182105 44 18.901109348955384 26.329640897836327 28.61256533911608 26.15668441409221 45 20.47875568430081 25.7419934296765 27.958466169307204 25.820784716715483 46 20.48371174728529 25.692938520544402 29.24947000469309 24.57387972747722 47 17.448982894502613 26.792476494101276 29.49120450536469 26.267336106031426 48 17.533640541808943 25.965926561260982 30.627862379233896 25.872570517696182 49 19.72705241694043 24.473443593934586 30.689863738611166 25.109640250513817 50 19.435656142281488 24.413363973265582 29.13790801547101 27.013071868981925 51 17.74189633129966 23.713446506885894 28.656664185263704 29.88799297655074 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 183.0 1 641.5 2 1100.0 3 2556.0 4 4012.0 5 2841.0 6 1670.0 7 1692.5 8 1715.0 9 1825.0 10 1935.0 11 2000.0 12 2065.0 13 1992.5 14 1920.0 15 1818.5 16 1717.0 17 2319.0 18 2921.0 19 2944.0 20 2967.0 21 3266.5 22 3566.0 23 4252.0 24 4938.0 25 6556.5 26 9790.0 27 11405.0 28 14649.5 29 17894.0 30 19147.5 31 20401.0 32 23987.0 33 27573.0 34 30626.0 35 33679.0 36 36151.0 37 38623.0 38 41154.0 39 43685.0 40 47752.0 41 51819.0 42 55869.0 43 59919.0 44 66490.5 45 73062.0 46 81042.5 47 89023.0 48 96978.5 49 104934.0 50 98911.5 51 92889.0 52 81041.0 53 69193.0 54 59200.0 55 49207.0 56 44714.5 57 40222.0 58 37427.5 59 34633.0 60 32389.5 61 30146.0 62 26342.5 63 22539.0 64 18841.5 65 15144.0 66 12231.0 67 9318.0 68 7239.5 69 5161.0 70 4442.5 71 3724.0 72 3106.0 73 2488.0 74 1856.5 75 1095.5 76 966.0 77 749.5 78 533.0 79 402.5 80 272.0 81 163.5 82 55.0 83 57.0 84 59.0 85 34.5 86 10.0 87 6.5 88 3.0 89 1.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 988688.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.437323450957745 #Duplication Level Percentage of deduplicated Percentage of total 1 69.91247486803249 17.78386236475097 2 11.967697570165123 6.088523881110627 3 5.262786866513603 4.016136353308767 4 2.8092619621911195 2.8584042076291096 5 1.6415934670526717 2.0878871998198982 6 1.0679844575402835 1.6299999652228707 7 0.7304602727319558 1.30066679578903 8 0.5288417347186702 1.0761854608323524 9 0.4231576991406259 0.968759933742285 >10 3.8857650051493957 24.27003576554438 >50 1.563090557810616 27.49056918787161 >100 0.19885114909121054 7.510517108546326 >500 0.00562407290358979 0.9425699993092503 >1k 0.0024103169586813388 1.9758817765225138 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTGCT 4882 0.49378570388231674 TruSeq Adapter, Index 13 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTGC 3846 0.3890003722104446 TruSeq Adapter, Index 19 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTGC 3659 0.3700864175553865 TruSeq Adapter, Index 19 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTGC 3570 0.3610845888692894 TruSeq Adapter, Index 19 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2023 0.20461460035926402 No Hit TCCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTG 1356 0.13715145728480574 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.011441425404172E-4 0.0 0.0 0.5384914148851812 0.0 2 1.011441425404172E-4 0.0 0.0 1.8094687100480638 0.0 3 1.011441425404172E-4 0.0 0.0 2.4870333209263187 0.0 4 1.011441425404172E-4 0.0 0.0 3.2314542100237893 0.0 5 1.011441425404172E-4 0.0 0.0 4.379743660285145 0.0 6 1.011441425404172E-4 0.0 0.0 5.038090884080721 0.0 7 1.011441425404172E-4 0.0 0.0 5.6341333160713996 0.0 8 1.011441425404172E-4 0.0 0.0 6.552724418623469 0.0 9 1.011441425404172E-4 0.0 0.0 6.991184276536178 0.0 10 1.011441425404172E-4 0.0 0.0 7.888029388442057 0.0 11 1.011441425404172E-4 0.0 0.0 9.645307720939265 0.0 12 1.011441425404172E-4 0.0 0.0 11.243385173077856 0.0 13 1.011441425404172E-4 0.0 0.0 11.737373165245254 0.0 14 1.011441425404172E-4 0.0 0.0 11.912757108410338 0.0 15 1.011441425404172E-4 0.0 0.0 12.190195491398702 0.0 16 1.011441425404172E-4 0.0 0.0 12.902755975595941 0.0 17 1.011441425404172E-4 0.0 0.0 13.93027931966404 0.0 18 1.011441425404172E-4 0.0 0.0 15.098494166005858 0.0 19 1.011441425404172E-4 0.0 0.0 15.850905442364022 0.0 20 1.011441425404172E-4 0.0 0.0 16.623039826517566 0.0 21 1.011441425404172E-4 0.0 0.0 17.658553557846357 0.0 22 1.011441425404172E-4 0.0 0.0 18.738368423607852 0.0 23 1.011441425404172E-4 0.0 0.0 19.707025876717427 0.0 24 1.011441425404172E-4 0.0 0.0 20.439107180424966 0.0 25 1.011441425404172E-4 0.0 0.0 21.058210476914862 0.0 26 1.011441425404172E-4 0.0 0.0 21.643025909083555 0.0 27 1.011441425404172E-4 0.0 0.0 22.219850953991553 0.0 28 1.011441425404172E-4 0.0 0.0 22.846236628744357 0.0 29 1.011441425404172E-4 0.0 0.0 23.478792096192127 0.0 30 1.011441425404172E-4 0.0 0.0 24.19782580551195 0.0 31 1.011441425404172E-4 0.0 0.0 24.867298884986972 0.0 32 1.011441425404172E-4 0.0 0.0 25.464453902545596 0.0 33 1.011441425404172E-4 0.0 0.0 26.06858786593951 0.0 34 2.022882850808344E-4 0.0 0.0 26.67980191931125 0.0 35 2.022882850808344E-4 0.0 0.0 27.341284611525577 0.0 36 2.022882850808344E-4 0.0 0.0 27.948756331623322 0.0 37 3.034324276212516E-4 0.0 0.0 28.589403330474326 0.0 38 3.034324276212516E-4 0.0 0.0 29.229241176185006 0.0 39 3.034324276212516E-4 0.0 0.0 29.871506481316654 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GATCGCG 25 3.890408E-5 45.000004 10 TCTACGA 25 3.890408E-5 45.000004 31 GTTCGTA 25 3.890408E-5 45.000004 30 AACGCGC 25 3.890408E-5 45.000004 15 AGTTCGT 50 2.1827873E-11 45.000004 29 ACGTCGT 25 3.890408E-5 45.000004 10 GCCCGTT 25 3.890408E-5 45.000004 13 TCGAACC 25 3.890408E-5 45.000004 11 CGGACTA 25 3.890408E-5 45.000004 41 CGTTGGT 20 7.0328085E-4 45.0 13 ATTCGGA 20 7.0328085E-4 45.0 38 CGCGATT 20 7.0328085E-4 45.0 25 TTATCCG 20 7.0328085E-4 45.0 1 TCTAGCG 35 1.2117016E-7 45.0 1 ATCCGAT 35 1.2117016E-7 45.0 38 AACGCTC 20 7.0328085E-4 45.0 14 ACTCGAA 20 7.0328085E-4 45.0 45 TACTCGA 20 7.0328085E-4 45.0 44 CGTAATG 20 7.0328085E-4 45.0 21 CGAGAGT 20 7.0328085E-4 45.0 37 >>END_MODULE