SRR2934337.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934337.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2490101
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7542	0.3028792808002567	No Hit
CCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGC	6559	0.26340297040160215	TruSeq Adapter, Index 21 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGCT	5108	0.20513224162393412	TruSeq Adapter, Index 15 (95% over 24bp)
TCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGC	4170	0.1674630868386463	TruSeq Adapter, Index 21 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGC	3742	0.1502750290048476	TruSeq Adapter, Index 21 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGTACT	30	2.1665273E-6	45.000004	36
ACTACGT	20	7.034873E-4	45.000004	14
TACGGGT	195	0.0	42.692307	4
TATAGCG	60	3.6379788E-12	41.250004	34
CGTTTTT	4500	0.0	40.65	1
TCTAGCG	100	0.0	40.500004	1
TCTTGCG	765	0.0	40.294117	1
CGTACCG	40	3.460391E-7	39.375004	26
CGTTCAT	380	0.0	39.078945	17
TTTGGGA	17245	0.0	38.724266	4
TCGTTCA	390	0.0	38.653847	16
TCGTCTA	35	6.2512263E-6	38.571426	12
TTGGGAC	6720	0.0	38.4375	5
AACGACG	130	0.0	38.076927	11
TATTGCG	195	0.0	38.076923	1
TGGGATC	4530	0.0	37.847683	6
TTGGGAT	12090	0.0	37.797768	5
ACACGAC	485	0.0	37.577316	26
CACTACG	30	1.1403044E-4	37.500004	34
TGGGCGA	2910	0.0	37.500004	6