SRR2934334.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934334.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1207070
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGCT	4762	0.39450901770402713	No Hit
TCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC	4636	0.38407051786557533	No Hit
GCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC	3032	0.2511867580173478	No Hit
CCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC	2855	0.2365231511014274	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2132	0.1766260448855493	No Hit
TCCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTG	1358	0.1125038315922026	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACGAT	30	2.1655924E-6	45.000004	9
CGCGGAC	25	3.8909224E-5	45.0	4
AAGCGAT	20	7.033428E-4	45.0	30
ATCGTCC	35	1.2119926E-7	45.0	31
TACGCTA	75	0.0	45.0	44
CCCAACG	20	7.033428E-4	45.0	24
CTACGAA	20	7.033428E-4	45.0	11
AACGATC	25	3.8909224E-5	45.0	20
GTCCGAT	50	2.1827873E-11	45.0	9
TCGTACC	20	7.033428E-4	45.0	37
TTACGTT	20	7.033428E-4	45.0	1
TTCGCGC	25	3.8909224E-5	45.0	1
TCGACAA	20	7.033428E-4	45.0	19
TGCGTTA	20	7.033428E-4	45.0	12
TCGCAAT	110	0.0	42.954544	21
CAATCGG	105	0.0	42.857143	25
TGTACGC	90	0.0	42.5	42
CGTTCGG	70	0.0	41.785713	2
CGGTCTA	70	0.0	41.785713	31
CGCAATC	115	0.0	41.08696	22