Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934333.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1478554 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACAAAATAAAA | 12302 | 0.832029131164638 | No Hit |
GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACCTGTCTCTT | 7259 | 0.490952646978061 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4819 | 0.32592654715350267 | No Hit |
GCTCAACTTGACCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATG | 3280 | 0.2218383636985866 | No Hit |
CCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC | 3006 | 0.20330674429205833 | Illumina Single End Adapter 1 (95% over 21bp) |
GCTCAACTTGACCCCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTA | 2901 | 0.1962052113078048 | No Hit |
GCTCAACTTGACCCTGCATTAGAACTGTCTCTTATACACATCTGACGCTCG | 2835 | 0.19174139057484543 | No Hit |
CTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGCT | 2655 | 0.17956733403041078 | Illumina Single End Adapter 1 (95% over 22bp) |
GCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC | 2185 | 0.1477795197199426 | Illumina Single End Adapter 1 (95% over 21bp) |
GCTCAACCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTC | 2040 | 0.13797264083692581 | No Hit |
TCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC | 1933 | 0.1307358405577341 | Illumina Single End Adapter 1 (95% over 21bp) |
GCTCAACTTGACCCTGCATTAGAAATTGAAGACCTGTCTCTTATACACATC | 1805 | 0.12207873368169171 | No Hit |
GCTCCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTC | 1794 | 0.12133476355953182 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTATGCG | 35 | 1.2122473E-7 | 45.0 | 1 |
TCAATCG | 25 | 3.89135E-5 | 45.0 | 32 |
CGAATCG | 20 | 7.0339424E-4 | 45.0 | 11 |
CGACTTA | 20 | 7.0339424E-4 | 45.0 | 20 |
CTCAACT | 4200 | 0.0 | 42.696426 | 2 |
TATGCGG | 90 | 0.0 | 42.5 | 2 |
ACTTGAC | 4080 | 0.0 | 42.463234 | 6 |
CTTGACC | 4340 | 0.0 | 42.35599 | 7 |
TTGACCC | 3845 | 0.0 | 42.249672 | 8 |
GCATTAG | 3480 | 0.0 | 42.155174 | 16 |
TCAACTT | 4135 | 0.0 | 42.06167 | 3 |
CCATACG | 75 | 0.0 | 42.0 | 2 |
TGCATTA | 3495 | 0.0 | 41.97425 | 15 |
CATTAGA | 3450 | 0.0 | 41.869568 | 17 |
GCTCAAC | 4525 | 0.0 | 41.618786 | 1 |
CCTGCAT | 3570 | 0.0 | 41.596638 | 13 |
TACGCGG | 120 | 0.0 | 41.250004 | 2 |
CGTTTTT | 2400 | 0.0 | 40.96875 | 1 |
CAACTTG | 4255 | 0.0 | 40.7168 | 4 |
TGACCCT | 3675 | 0.0 | 40.591835 | 9 |