FastQCFastQC Report
Sat 14 Jan 2017
SRR2934333.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934333.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1478554
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACAAAATAAAA123020.832029131164638No Hit
GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACCTGTCTCTT72590.490952646978061No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT48190.32592654715350267No Hit
GCTCAACTTGACCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATG32800.2218383636985866No Hit
CCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC30060.20330674429205833Illumina Single End Adapter 1 (95% over 21bp)
GCTCAACTTGACCCCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTA29010.1962052113078048No Hit
GCTCAACTTGACCCTGCATTAGAACTGTCTCTTATACACATCTGACGCTCG28350.19174139057484543No Hit
CTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGCT26550.17956733403041078Illumina Single End Adapter 1 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC21850.1477795197199426Illumina Single End Adapter 1 (95% over 21bp)
GCTCAACCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTC20400.13797264083692581No Hit
TCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC19330.1307358405577341Illumina Single End Adapter 1 (95% over 21bp)
GCTCAACTTGACCCTGCATTAGAAATTGAAGACCTGTCTCTTATACACATC18050.12207873368169171No Hit
GCTCCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTC17940.12133476355953182No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTATGCG351.2122473E-745.01
TCAATCG253.89135E-545.032
CGAATCG207.0339424E-445.011
CGACTTA207.0339424E-445.020
CTCAACT42000.042.6964262
TATGCGG900.042.52
ACTTGAC40800.042.4632346
CTTGACC43400.042.355997
TTGACCC38450.042.2496728
GCATTAG34800.042.15517416
TCAACTT41350.042.061673
CCATACG750.042.02
TGCATTA34950.041.9742515
CATTAGA34500.041.86956817
GCTCAAC45250.041.6187861
CCTGCAT35700.041.59663813
TACGCGG1200.041.2500042
CGTTTTT24000.040.968751
CAACTTG42550.040.71684
TGACCCT36750.040.5918359