SRR2934327.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934327.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1062348
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC	4219	0.397139167203214	TruSeq Adapter, Index 13 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGCT	3818	0.35939259075180635	TruSeq Adapter, Index 8 (95% over 24bp)
TCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC	3734	0.35148557723081325	TruSeq Adapter, Index 13 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC	2830	0.26639105076679204	TruSeq Adapter, Index 13 (95% over 23bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2718	0.25584836607213457	No Hit
TTTTTGGGGAGCCCGAGGAAATCGCAGATAAGTTTTTAATTAAAAAGATTG	1127	0.10608576473999105	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCATA	20	7.033043E-4	45.000004	24
CCGGCAT	20	7.033043E-4	45.000004	17
ATTCGCA	20	7.033043E-4	45.000004	39
TCTAGCG	20	7.033043E-4	45.000004	1
CTCGCTA	20	7.033043E-4	45.000004	22
CGTAATG	20	7.033043E-4	45.000004	33
CGTCGTG	20	7.033043E-4	45.000004	18
TCGAGGT	20	7.033043E-4	45.000004	38
CGCAACA	20	7.033043E-4	45.000004	22
TTCGATA	20	7.033043E-4	45.000004	31
TCGAAGA	20	7.033043E-4	45.000004	38
TACACGA	20	7.033043E-4	45.000004	17
TCGAAAG	20	7.033043E-4	45.000004	26
TAACTCG	20	7.033043E-4	45.000004	29
CTAGCGA	20	7.033043E-4	45.000004	27
CGCATCG	25	3.8906066E-5	45.0	21
TCGCTAG	25	3.8906066E-5	45.0	15
ACTACGT	35	1.2118107E-7	45.0	14
TAGTCGG	25	3.8906066E-5	45.0	33
ACGGTTG	25	3.8906066E-5	45.0	12