SRR2934323.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934323.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	676858
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC	3313	0.4894675101720006	TruSeq Adapter, Index 15 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGCT	2785	0.41146001081467604	TruSeq Adapter, Index 21 (95% over 23bp)
TCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC	2442	0.3607846845276262	TruSeq Adapter, Index 15 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC	2230	0.3294634916038519	TruSeq Adapter, Index 15 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1824	0.2694804523253031	No Hit
TCCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTG	771	0.11390867803882056	TruSeq Adapter, Index 21 (95% over 21bp)
GCCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTG	728	0.10755579456843238	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGTA	20	7.031228E-4	45.000004	20
AGCGTAA	20	7.031228E-4	45.000004	12
ACAGTCG	20	7.031228E-4	45.000004	25
GTACATA	20	7.031228E-4	45.000004	20
GAATGGT	20	7.031228E-4	45.000004	10
CATGCGG	20	7.031228E-4	45.000004	2
ATTCGCT	20	7.031228E-4	45.000004	11
AGGCGAT	20	7.031228E-4	45.000004	23
TATGCGA	20	7.031228E-4	45.000004	35
CCGTCCA	20	7.031228E-4	45.000004	45
ATCGTAG	20	7.031228E-4	45.000004	27
CGTTACC	20	7.031228E-4	45.000004	25
CGTTACA	40	6.8084773E-9	45.000004	20
CTTATCA	20	7.031228E-4	45.000004	15
CATAGCA	20	7.031228E-4	45.000004	34
GTGTCGA	40	6.8084773E-9	45.000004	22
ACAATCG	20	7.031228E-4	45.000004	42
TCATGCG	20	7.031228E-4	45.000004	1
GGACGTA	20	7.031228E-4	45.000004	9
ACGTATA	20	7.031228E-4	45.000004	20