SRR2934322.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934322.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1938149
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7812	0.4030649862317087	No Hit
CTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGCT	4049	0.20891066682695705	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC	3541	0.18270009168541737	No Hit
TCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC	3010	0.15530281727565837	No Hit
GCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC	2731	0.14090763919595448	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGCGTA	20	7.034488E-4	45.0	26
CGCGTAG	20	7.034488E-4	45.0	27
CGTTCAT	330	0.0	42.272728	17
TCGACGG	60	3.6379788E-12	41.250004	2
CGAACGA	105	0.0	40.714287	22
CGATTGA	50	1.0822987E-9	40.5	10
CGTTTTT	3590	0.0	39.735374	1
CACGACC	975	0.0	39.692307	27
AAACACG	905	0.0	39.530388	40
CGAATAT	115	0.0	39.130436	14
CGTTTGG	1040	0.0	38.72596	2
AACACGT	910	0.0	38.571426	41
ACACGAC	1005	0.0	38.50746	26
TCAAGCG	1030	0.0	38.4466	17
AGACACG	1030	0.0	38.228153	24
CGGGTAT	195	0.0	38.076927	6
ACGACCA	1015	0.0	37.906406	28
ACGTGAG	915	0.0	37.868855	44
ACACGTG	940	0.0	37.81915	42
GCGAGAC	1065	0.0	37.816902	21