SRR2934321.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934321.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	477850
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGC	3096	0.6479020613163127	TruSeq Adapter, Index 15 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGCT	2821	0.5903526211154129	TruSeq Adapter, Index 14 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGC	2588	0.5415925499633777	TruSeq Adapter, Index 15 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGC	2287	0.4786020717798472	TruSeq Adapter, Index 15 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1464	0.3063722925604269	No Hit
TCCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTG	1096	0.2293606780370409	TruSeq Adapter, Index 14 (95% over 21bp)
TTGGGGAGAAAAGACAGGCCAAGAGGAGTCATTGAGCCAAATGAACACAAG	1058	0.22140839175473476	No Hit
TTCCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCT	597	0.12493460290886262	No Hit
TTTTTTGGGGTGCTCGCTTCGGCAGCACATATACTAAAATTGGAACGATAC	558	0.11677304593491682	No Hit
TGCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTG	513	0.1073558648111332	TruSeq Adapter, Index 14 (95% over 21bp)
GCCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTG	508	0.10630951135293502	No Hit
TTCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTG	483	0.10107774406194414	TruSeq Adapter, Index 14 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTATCG	20	7.029144E-4	45.000004	29
TCGCACC	20	7.029144E-4	45.000004	31
CTACTAT	40	6.8012014E-9	45.000004	29
GTCGAAA	20	7.029144E-4	45.000004	44
CGAAATG	20	7.029144E-4	45.000004	12
GATCGAA	20	7.029144E-4	45.000004	9
CTCCGAC	20	7.029144E-4	45.000004	5
CTATCGT	20	7.029144E-4	45.000004	30
CGACATA	20	7.029144E-4	45.000004	8
ATCGTGT	20	7.029144E-4	45.000004	32
GTAATCG	20	7.029144E-4	45.000004	22
TAGCACA	20	7.029144E-4	45.000004	23
TCGGAGA	20	7.029144E-4	45.000004	29
ACCAGTC	20	7.029144E-4	45.000004	32
CGGGCAA	40	6.8012014E-9	45.000004	6
TGTTAAG	20	7.029144E-4	45.000004	33
GAACGTA	20	7.029144E-4	45.000004	18
CGAATAT	20	7.029144E-4	45.000004	14
TTAACTA	20	7.029144E-4	45.000004	21
GACGGAT	20	7.029144E-4	45.000004	21