SRR2934319.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934319.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1502210
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4275	0.28458071774252597	No Hit
CCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC	3485	0.23199153247548612	No Hit
TCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC	3232	0.2151496794722442	No Hit
CTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGCT	3122	0.207827134688226	No Hit
GCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC	2539	0.16901764733292948	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAA	20	7.033978E-4	45.000004	39
CCGATAG	20	7.033978E-4	45.000004	10
CGCGCAT	20	7.033978E-4	45.000004	26
TCTAGCG	40	6.8175723E-9	45.000004	1
GAACGTA	20	7.033978E-4	45.000004	9
CGTTTAA	40	6.8175723E-9	45.000004	41
ATCGATA	20	7.033978E-4	45.000004	44
GCGATCG	35	1.2122655E-7	45.0	9
CACGTTA	25	3.8913804E-5	45.0	29
CTTTGCG	525	0.0	40.714287	1
TACGGGA	225	0.0	40.0	4
CTACGGG	155	0.0	39.19355	3
CGTTTTT	2385	0.0	38.867924	1
CAACCCG	220	0.0	38.863636	23
TTTGGGA	9880	0.0	38.737347	4
TTCGGGA	1540	0.0	38.57143	4
CGTTATG	35	6.249571E-6	38.571426	2
CATACGA	175	0.0	38.571426	18
TTGGGAT	6255	0.0	38.129498	5
CGTTTGG	1060	0.0	37.995285	2