FastQCFastQC Report
Sat 14 Jan 2017
SRR2934317.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934317.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1539937
Sequences flagged as poor quality0
Sequence length51
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT71400.4636553313544645No Hit
CTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCTGCT28590.18565694570622043No Hit
CCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCTGC27920.18130611836717994No Hit
CGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT27650.1795527998872681No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG21310.13838228447007897No Hit
GCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCTGC20180.13104432194304053No Hit
TCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCTGC16970.1101993133485331No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGACATA207.034034E-445.026
CGTTAGG4100.043.3536572
TCGTTAG2200.042.9545481
CGTTTAT13200.042.784091
TTTAGGG57550.041.4031263
TTAGGGA25350.041.0946774
CTTTAGG16700.041.0928152
CGTTTTT26850.040.2234651
TAGGGAC10900.040.045875
TTTTAGG32500.039.8076932
TGTAGGG17950.039.7353743
CCGTTAG850.039.7058831
CTAGGGA15550.039.5016064
TTAGGGG58100.039.384684
TTAGGGT8950.039.2178764
GTTAGGG20650.039.1162223
TAGGGGA29350.039.0971035
TAGGGTG5050.038.762385
CTTAGGG26100.038.7068943
TAGGGGG47500.038.6526345