Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934317.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1539937 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7140 | 0.4636553313544645 | No Hit |
CTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCTGCT | 2859 | 0.18565694570622043 | No Hit |
CCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCTGC | 2792 | 0.18130611836717994 | No Hit |
CGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2765 | 0.1795527998872681 | No Hit |
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG | 2131 | 0.13838228447007897 | No Hit |
GCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCTGC | 2018 | 0.13104432194304053 | No Hit |
TCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCTGC | 1697 | 0.1101993133485331 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGACATA | 20 | 7.034034E-4 | 45.0 | 26 |
CGTTAGG | 410 | 0.0 | 43.353657 | 2 |
TCGTTAG | 220 | 0.0 | 42.954548 | 1 |
CGTTTAT | 1320 | 0.0 | 42.78409 | 1 |
TTTAGGG | 5755 | 0.0 | 41.403126 | 3 |
TTAGGGA | 2535 | 0.0 | 41.094677 | 4 |
CTTTAGG | 1670 | 0.0 | 41.092815 | 2 |
CGTTTTT | 2685 | 0.0 | 40.223465 | 1 |
TAGGGAC | 1090 | 0.0 | 40.04587 | 5 |
TTTTAGG | 3250 | 0.0 | 39.807693 | 2 |
TGTAGGG | 1795 | 0.0 | 39.735374 | 3 |
CCGTTAG | 85 | 0.0 | 39.705883 | 1 |
CTAGGGA | 1555 | 0.0 | 39.501606 | 4 |
TTAGGGG | 5810 | 0.0 | 39.38468 | 4 |
TTAGGGT | 895 | 0.0 | 39.217876 | 4 |
GTTAGGG | 2065 | 0.0 | 39.116222 | 3 |
TAGGGGA | 2935 | 0.0 | 39.097103 | 5 |
TAGGGTG | 505 | 0.0 | 38.76238 | 5 |
CTTAGGG | 2610 | 0.0 | 38.706894 | 3 |
TAGGGGG | 4750 | 0.0 | 38.652634 | 5 |