SRR2934315.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934315.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	675971
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTGC	3642	0.5387805098147702	No Hit
CTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTGCT	2747	0.40637838013760946	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2478	0.36658377356425054	No Hit
TCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTGC	1821	0.2693902549073851	No Hit
GCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTGC	1801	0.2664315480989569	No Hit
CCTGTATCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTGC	1004	0.14852708178309423	No Hit
CGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	873	0.1291475521878897	No Hit
CTGTCACTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTGCT	808	0.11953175506049815	Illumina Single End Adapter 1 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTG	771	0.11405814746490604	No Hit
TCCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTG	750	0.11095150531605646	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAGCGAT	25	3.8890947E-5	45.0	21
TCGTTGA	50	2.1827873E-11	45.0	24
ACGCATA	20	7.0312223E-4	45.0	34
ACTTCGC	20	7.0312223E-4	45.0	31
ACGGGTA	20	7.0312223E-4	45.0	5
AGACGGT	25	3.8890947E-5	45.0	17
CGTGTAG	25	3.8890947E-5	45.0	20
CGTAAGC	20	7.0312223E-4	45.0	39
TGTCGAA	20	7.0312223E-4	45.0	40
GTTACGT	30	2.16417E-6	44.999996	31
CCGTAAC	30	2.16417E-6	44.999996	13
ATAAGCG	30	2.16417E-6	44.999996	33
TCCGTAA	30	2.16417E-6	44.999996	12
TTACGTA	30	2.16417E-6	44.999996	32
TAGGGAC	500	0.0	43.649998	5
TTAGGGA	1300	0.0	42.923077	4
CGCTAGG	90	0.0	42.5	2
CGTTTAT	460	0.0	42.06522	1
AGGGCGA	355	0.0	41.830986	6
CATTCTA	70	0.0	41.785713	45