SRR2934312.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934312.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1706538
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27107	1.588420533266766	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTT	5255	0.3079333715393387	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCT	4825	0.28273615940576774	No Hit
CGCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTG	4688	0.2747082104236765	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTC	4432	0.2597070794790388	No Hit
CTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGCT	3836	0.2247825714985544	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGC	3605	0.21124639474772905	No Hit
CGTCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCT	2720	0.15938701628677476	No Hit
TCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGC	2306	0.1351273748372436	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTC	2124	0.12446250830629027	No Hit
GCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGC	2037	0.11936446771182359	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCC	2017	0.11819250435677377	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGATAT	45	3.8562575E-10	45.000004	9
GGTACGA	20	7.03425E-4	45.0	8
TATGCGC	20	7.03425E-4	45.0	45
CGTTTAT	5840	0.0	44.768833	1
CGTTTTT	13305	0.0	44.222095	1
TCGTTAG	165	0.0	43.636364	1
GTTTATT	5880	0.0	43.163265	2
CGTTATT	680	0.0	43.014706	1
GTTAGGG	2090	0.0	41.44737	3
GCGTTAG	175	0.0	41.14286	1
CGTTTTC	635	0.0	41.102367	1
TTAGGGA	3110	0.0	41.09325	4
CTAGGGA	1940	0.0	40.94072	4
AGGGCGA	915	0.0	40.573772	6
TATTGCG	50	1.0822987E-9	40.5	1
TAGGGAC	1395	0.0	40.483868	5
TCGTAGG	430	0.0	40.2907	2
AGGGATT	900	0.0	40.25	6
TTTAGGG	5635	0.0	40.248447	3
CGTTAGG	415	0.0	40.120483	2