SRR2934309.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934309.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1380748
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13990	1.0132189219176853	No Hit
CGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5248	0.38008383861501155	No Hit
CTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCTGCT	2783	0.20155741670456884	No Hit
CCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCTGC	2450	0.17744005423147455	No Hit
CGCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCTG	2418	0.17512246984967567	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTT	1900	0.1376065726693068	No Hit
GCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCTGC	1837	0.1330438284176403	No Hit
TCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCTGC	1835	0.13289897939377787	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCT	1661	0.12029711431774662	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTC	1607	0.11638619067346105	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTAACG	25	3.891214E-5	45.000004	11
CGAATCG	20	7.033781E-4	45.0	30
CGTAAGG	30	2.1658216E-6	44.999996	2
CGTTTAT	2870	0.0	43.82404	1
CGTTTTT	7065	0.0	43.535034	1
GCGTTAG	110	0.0	42.954544	1
AGGGCGA	615	0.0	41.707317	6
TGCGTAG	125	0.0	41.399998	1
CGTAGGG	605	0.0	40.90909	3
CTAGGGA	1565	0.0	40.83067	4
TAGGGCG	480	0.0	40.781246	5
TTAGGGA	2720	0.0	40.69853	4
GTTAGGG	1780	0.0	40.57584	3
TCGTAGG	405	0.0	40.555553	2
CTTAGGG	2325	0.0	40.54839	3
GTTTATT	3130	0.0	40.327473	2
TAGGGAC	1070	0.0	40.16355	5
CGTTAGG	415	0.0	40.120483	2
GTAGGGA	825	0.0	40.090908	4
TTTAGGG	5155	0.0	40.024246	3