FastQCFastQC Report
Sat 14 Jan 2017
SRR2934303.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934303.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1268269
Sequences flagged as poor quality0
Sequence length51
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT67730.5340349720761132No Hit
CTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTCTGCT53470.421598257152071No Hit
TCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTCTGC43840.3456679931465643No Hit
CCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTCTGC43210.34070059269760594No Hit
GCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTCTGC36280.28605918775906375No Hit
CGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT24640.19428055089259455No Hit
CGCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTCTG24090.1899439314530277No Hit
TCCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTCTG18520.1460258036741417No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGC16340.12883702116822218No Hit
TCTGTATCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTCTGC15810.12465809698100323No Hit
GCTGTATCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTCTGC15640.12331768733604621No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCC15340.12095225855082795No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCG14740.1162214009803914No Hit
CTGTCACTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTCTGCT14540.11464444845691252No Hit
TTCCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTCT13320.10502503806369154No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGCAG600.045.0000041
ATTACGA302.1656797E-645.00000415
CCGCTAG302.1656797E-645.0000041
GAAGCGC207.033564E-445.09
TTTCGAA207.033564E-445.019
CCGTCAC207.033564E-445.033
CCGAACC207.033564E-445.035
ACTCCGC207.033564E-445.041
GACGATA207.033564E-445.09
CGTCACT207.033564E-445.034
CGCCAGA351.2120654E-745.016
CTTCGCG551.8189894E-1244.9999961
CGTTTAT14850.043.9393961
CGTTTTT37150.043.8492621
TAGGGCG4800.043.5937545
TGTTCCG1350.043.3333321
TTAGGGA32500.042.5769234
AAGGGCG750.042.05
TCGTTAG1150.041.0869561
TAGGGAT20100.041.082095