Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934303.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1268269 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6773 | 0.5340349720761132 | No Hit |
CTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTCTGCT | 5347 | 0.421598257152071 | No Hit |
TCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTCTGC | 4384 | 0.3456679931465643 | No Hit |
CCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTCTGC | 4321 | 0.34070059269760594 | No Hit |
GCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTCTGC | 3628 | 0.28605918775906375 | No Hit |
CGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2464 | 0.19428055089259455 | No Hit |
CGCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTCTG | 2409 | 0.1899439314530277 | No Hit |
TCCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTCTG | 1852 | 0.1460258036741417 | No Hit |
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGC | 1634 | 0.12883702116822218 | No Hit |
TCTGTATCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTCTGC | 1581 | 0.12465809698100323 | No Hit |
GCTGTATCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTCTGC | 1564 | 0.12331768733604621 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCC | 1534 | 0.12095225855082795 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCG | 1474 | 0.1162214009803914 | No Hit |
CTGTCACTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTCTGCT | 1454 | 0.11464444845691252 | No Hit |
TTCCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTCT | 1332 | 0.10502503806369154 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCCGCAG | 60 | 0.0 | 45.000004 | 1 |
ATTACGA | 30 | 2.1656797E-6 | 45.000004 | 15 |
CCGCTAG | 30 | 2.1656797E-6 | 45.000004 | 1 |
GAAGCGC | 20 | 7.033564E-4 | 45.0 | 9 |
TTTCGAA | 20 | 7.033564E-4 | 45.0 | 19 |
CCGTCAC | 20 | 7.033564E-4 | 45.0 | 33 |
CCGAACC | 20 | 7.033564E-4 | 45.0 | 35 |
ACTCCGC | 20 | 7.033564E-4 | 45.0 | 41 |
GACGATA | 20 | 7.033564E-4 | 45.0 | 9 |
CGTCACT | 20 | 7.033564E-4 | 45.0 | 34 |
CGCCAGA | 35 | 1.2120654E-7 | 45.0 | 16 |
CTTCGCG | 55 | 1.8189894E-12 | 44.999996 | 1 |
CGTTTAT | 1485 | 0.0 | 43.939396 | 1 |
CGTTTTT | 3715 | 0.0 | 43.849262 | 1 |
TAGGGCG | 480 | 0.0 | 43.593754 | 5 |
TGTTCCG | 135 | 0.0 | 43.333332 | 1 |
TTAGGGA | 3250 | 0.0 | 42.576923 | 4 |
AAGGGCG | 75 | 0.0 | 42.0 | 5 |
TCGTTAG | 115 | 0.0 | 41.086956 | 1 |
TAGGGAT | 2010 | 0.0 | 41.08209 | 5 |