SRR2934293.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934293.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1225408
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGCT	6327	0.5163178304695253	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGC	5870	0.4790241291063874	No Hit
CCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGC	5329	0.4348755679740951	No Hit
GCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGC	4724	0.3855042565414947	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4096	0.3342560192197211	No Hit
CGCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTG	2390	0.1950370815271322	No Hit
TCCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTG	2375	0.19381299942549746	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCC	2063	0.1683520917114953	No Hit
TCTGTATCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGC	1922	0.1568457199561289	No Hit
CTGTCACTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGCT	1804	0.14721627408993576	Illumina Single End Adapter 2 (95% over 21bp)
GCTGTATCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGC	1792	0.14623700840862797	No Hit
TTCCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCT	1714	0.13987178148012744	No Hit
CGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1535	0.12526440173395312	No Hit
CCTGTATCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGC	1488	0.12142894448216432	No Hit
TGCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTG	1294	0.10559748263435526	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTC	1281	0.10453661147960516	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTATGCG	45	3.8562575E-10	45.000004	1
AATCCGG	20	7.0334703E-4	45.0	2
TCGTTGA	20	7.0334703E-4	45.0	24
TCGTTAT	20	7.0334703E-4	45.0	1
CAACGCT	20	7.0334703E-4	45.0	37
GCACGAT	20	7.0334703E-4	45.0	9
GTCTACG	40	6.8157533E-9	45.0	1
CGACATC	20	7.0334703E-4	45.0	29
AGGCGGC	20	7.0334703E-4	45.0	6
CCGTACG	20	7.0334703E-4	45.0	31
TACGAAT	80	0.0	45.0	12
TGCGAAG	20	7.0334703E-4	45.0	1
CTCGCAG	20	7.0334703E-4	45.0	1
GCGGCTA	40	6.8157533E-9	45.0	24
CTCGAAG	25	3.890957E-5	45.0	17
GCTACGA	80	0.0	45.0	10
CGCCGTA	20	7.0334703E-4	45.0	29
CGGTACC	20	7.0334703E-4	45.0	15
GCTCGGA	20	7.0334703E-4	45.0	19
AGGGCGC	40	6.8157533E-9	45.0	6