SRR2934288.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934288.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	843764
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTCTGC	3357	0.39786006513669697	RNA PCR Primer, Index 36 (96% over 25bp)
CTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTCTGCT	2407	0.2852693407161244	RNA PCR Primer, Index 36 (96% over 26bp)
GCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTCTGC	2031	0.240707117155982	RNA PCR Primer, Index 15 (96% over 25bp)
TCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTCTGC	1806	0.21404089295110956	RNA PCR Primer, Index 15 (96% over 25bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1465	0.17362674871172507	No Hit
CCTGTATCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTCTGC	1090	0.1291830417036043	RNA PCR Primer, Index 36 (96% over 25bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAATA	25	3.88992E-5	45.000004	12
CTAGACG	25	3.88992E-5	45.000004	4
TCCGATA	20	7.0322177E-4	45.000004	14
CGGTTAT	25	3.88992E-5	45.000004	11
AACATCG	30	2.164812E-6	45.000004	37
TATAGCG	20	7.0322177E-4	45.000004	1
CACCGTA	25	3.88992E-5	45.000004	45
CGTTTCG	30	2.164812E-6	45.000004	42
CGAGGGT	110	0.0	42.954544	4
GTTTGCG	160	0.0	42.187504	1
GCGATGT	160	0.0	42.187504	9
CCGTTAG	70	0.0	41.785713	1
TCTTGCG	190	0.0	41.44737	1
CGTTAGG	250	0.0	41.4	2
TTTAGGG	3240	0.0	40.694447	3
TGTAGGG	990	0.0	40.681816	3
TTAGGGT	795	0.0	40.4717	4
TAGGGTG	435	0.0	40.34483	5
TAGGGCG	435	0.0	40.34483	5
TCGTTTG	190	0.0	40.263157	1