##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934287.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1299411 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.575582321528756 34.0 31.0 34.0 31.0 34.0 2 32.766551152791536 34.0 31.0 34.0 31.0 34.0 3 32.78254378329874 34.0 31.0 34.0 31.0 34.0 4 36.206617459756764 37.0 35.0 37.0 35.0 37.0 5 35.30428940496887 37.0 35.0 37.0 35.0 37.0 6 26.083516300847077 37.0 0.0 37.0 0.0 37.0 7 31.140193518447973 37.0 19.0 37.0 17.0 37.0 8 34.90272438820358 37.0 32.0 37.0 32.0 37.0 9 37.44936821375223 39.0 37.0 39.0 35.0 39.0 10 37.60346187618852 39.0 37.0 39.0 35.0 39.0 11 37.657230083476286 39.0 37.0 39.0 35.0 39.0 12 37.52601832676497 39.0 37.0 39.0 35.0 39.0 13 37.604459251153024 39.0 37.0 39.0 35.0 39.0 14 38.9274748328281 40.0 38.0 41.0 35.0 41.0 15 39.0150175733467 40.0 38.0 41.0 35.0 41.0 16 39.06254833920907 40.0 38.0 41.0 35.0 41.0 17 39.03602863143378 40.0 38.0 41.0 35.0 41.0 18 38.9859459401221 40.0 38.0 41.0 35.0 41.0 19 38.95383600723712 40.0 38.0 41.0 35.0 41.0 20 38.87865271265212 40.0 38.0 41.0 35.0 41.0 21 38.77628864154605 40.0 38.0 41.0 35.0 41.0 22 38.74244407658547 40.0 38.0 41.0 35.0 41.0 23 38.682493837592574 40.0 38.0 41.0 35.0 41.0 24 38.6418769734903 40.0 38.0 41.0 35.0 41.0 25 38.547538846446585 40.0 38.0 41.0 35.0 41.0 26 38.51015113770778 40.0 38.0 41.0 35.0 41.0 27 38.491368012122415 40.0 38.0 41.0 35.0 41.0 28 38.43327553791679 40.0 37.0 41.0 35.0 41.0 29 38.416631073617204 40.0 37.0 41.0 35.0 41.0 30 38.19311826666082 40.0 37.0 41.0 34.0 41.0 31 38.18880323469634 40.0 37.0 41.0 34.0 41.0 32 38.082381940740845 40.0 37.0 41.0 34.0 41.0 33 37.95810871233197 40.0 37.0 41.0 34.0 41.0 34 37.83482208477533 40.0 37.0 41.0 34.0 41.0 35 37.76866133963773 40.0 37.0 41.0 34.0 41.0 36 37.6974252180411 40.0 37.0 41.0 33.0 41.0 37 37.65071020639351 40.0 37.0 41.0 33.0 41.0 38 37.566150355815054 40.0 37.0 41.0 33.0 41.0 39 37.51215204427237 40.0 37.0 41.0 33.0 41.0 40 37.43155167995346 40.0 36.0 41.0 33.0 41.0 41 37.33889200568565 40.0 36.0 41.0 33.0 41.0 42 37.30030529216699 40.0 36.0 41.0 33.0 41.0 43 37.232695428928956 40.0 36.0 41.0 33.0 41.0 44 37.10366773869084 40.0 36.0 41.0 32.0 41.0 45 37.05686499498619 40.0 35.0 41.0 32.0 41.0 46 36.989368259927 40.0 35.0 41.0 32.0 41.0 47 36.937073797282 39.0 35.0 41.0 32.0 41.0 48 36.904933081219106 39.0 35.0 41.0 32.0 41.0 49 36.86746456663827 39.0 35.0 41.0 32.0 41.0 50 36.775031148728154 39.0 35.0 41.0 32.0 41.0 51 35.87786004582076 38.0 35.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 9.0 10 15.0 11 12.0 12 17.0 13 12.0 14 8.0 15 20.0 16 29.0 17 84.0 18 149.0 19 235.0 20 421.0 21 809.0 22 1381.0 23 2390.0 24 4259.0 25 7245.0 26 9927.0 27 10856.0 28 11075.0 29 11234.0 30 13279.0 31 17128.0 32 23691.0 33 39644.0 34 62914.0 35 90694.0 36 108655.0 37 193952.0 38 307298.0 39 381685.0 40 282.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 21.80741889979383 4.285018366013524 56.20838980122532 17.699172932967322 2 21.596785004898372 3.969798624145863 52.87857344596898 21.554842924986783 3 19.26357403469726 3.9115414599383875 53.99661846790585 22.828266037458512 4 18.085501815822706 4.551600686772699 53.170628846454285 24.192268650950314 5 17.30661045658379 7.82531470027574 50.77092621195295 24.097148631187515 6 15.618076189904503 30.99527401261033 40.306261837093885 13.080387960391285 7 83.47027999609054 1.6477465559395756 10.636665381468989 4.245308066500899 8 85.65111423560367 2.0975657432482873 8.50639251168414 3.744927509463903 9 80.00301675143584 4.896295321495662 10.54408497388432 4.556602953184173 10 37.260497256064475 31.747460965006454 17.416737275581013 13.575304503348054 11 25.04765620731239 24.478321331741842 31.030059003656273 19.443963457289495 12 24.829172602048157 21.4966627187241 33.07898732579607 20.59517735343167 13 23.170805849727298 22.600393562929668 34.066588631310644 20.162211956032387 14 19.297204656571324 24.726202871916584 33.72266357603561 22.253928895476488 15 17.75750705511959 26.003781713407076 35.71079512178979 20.52791610968354 16 20.196843031188745 24.950612238929793 34.408897569745065 20.4436471601364 17 20.257331975795186 24.807701335451217 31.71929435721261 23.215672331540983 18 20.398088056819592 24.73566869912599 32.80817231807334 22.05807092598108 19 22.105553977917687 26.9547510372007 30.751317327619976 20.188377657261636 20 24.12031297256988 26.01086184432793 30.530294110177614 19.338531072924578 21 23.872662306229515 26.38757098408433 30.462417202871144 19.27734950681501 22 22.14041592690842 24.48193835514706 30.628800279511253 22.74884543843326 23 21.15981779436991 25.916819235792214 30.538220778491176 22.385142191346695 24 21.10294587316869 24.23036283362231 32.44739347288887 22.21929782032013 25 20.496902057932402 26.108367560379282 30.18406031655881 23.21067006512951 26 20.118884633114543 27.17523554902952 30.401004762927204 22.304875054928733 27 20.17883487210744 26.37602729236554 30.894843894656887 22.550293940870134 28 18.374709772350702 26.4211246480136 32.1256323057139 23.0785332739218 29 19.94565229938795 24.26784135273597 31.724450539513672 24.062055808362402 30 21.04976793331748 24.10784578551359 31.494346284585863 23.34803999658307 31 20.459346580873948 26.10636665381469 29.836979985547295 23.597306779764065 32 21.03399155463514 25.871183174530614 30.02883614191353 23.06598912892072 33 21.12872678467398 25.009562024640395 29.915169257455876 23.94654193322975 34 18.9939903540912 24.363730951946692 31.796329259949314 24.845949434012795 35 19.74971737194775 23.652716500014236 32.10924026347322 24.488325864564793 36 19.088956457964414 25.76936781357092 30.58770473699238 24.55397099147229 37 19.185538678678263 26.211568164345227 31.05268463942509 23.550208517551415 38 20.227164461436757 25.071282296363506 30.70167945322919 23.99987378897054 39 20.717540485650808 24.421295494651037 30.885839815116235 23.97532420458192 40 20.72084967727686 23.873970591290977 32.89921356676217 22.505966164669992 41 17.47707230429787 24.827864316986698 33.99709560716355 23.69796777155188 42 19.29227934810464 24.891816369108774 31.827189395810873 23.988714886975714 43 19.7701881852624 24.342952306852876 31.670964767883298 24.21589474000143 44 20.182759727291828 24.898280836471294 29.577785627488147 25.341173808748735 45 20.804041215596914 23.240683663598354 29.6210359924612 26.334239128343533 46 19.75926015710195 24.516569430303424 30.314350117091514 25.409820295503117 47 18.492301511992743 24.74167141881976 32.30563693858217 24.46039013060533 48 18.78150946852074 22.93708457139427 33.07252285843355 25.20888310165144 49 19.794506895816642 22.69482096118934 32.010964967973955 25.499707175020063 50 19.397480858635184 22.647183993363146 31.665423795858278 26.289911352143395 51 17.87117393957724 22.58569459547441 30.818578571368104 28.724552893580245 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 235.0 1 853.0 2 1471.0 3 8989.0 4 16507.0 5 10807.0 6 5107.0 7 4810.0 8 4513.0 9 4488.5 10 4464.0 11 4483.0 12 4502.0 13 4437.0 14 4372.0 15 4334.5 16 4297.0 17 4304.5 18 4312.0 19 4578.0 20 4844.0 21 5533.0 22 6222.0 23 6624.0 24 7026.0 25 8901.5 26 13140.0 27 15503.0 28 17765.5 29 20028.0 30 23048.0 31 26068.0 32 30574.5 33 35081.0 34 39213.5 35 43346.0 36 46158.0 37 48970.0 38 53393.0 39 57816.0 40 62350.0 41 66884.0 42 72868.0 43 78852.0 44 85685.0 45 92518.0 46 102530.0 47 112542.0 48 120700.5 49 128859.0 50 122914.0 51 116969.0 52 102228.5 53 87488.0 54 77005.0 55 66522.0 56 59971.5 57 53421.0 58 50678.0 59 47935.0 60 43835.5 61 39736.0 62 35085.5 63 30435.0 64 25075.0 65 19715.0 66 15691.5 67 11668.0 68 9858.0 69 8048.0 70 6668.0 71 5288.0 72 4308.5 73 3329.0 74 2536.5 75 1436.5 76 1129.0 77 771.5 78 414.0 79 371.0 80 328.0 81 195.0 82 62.0 83 53.0 84 44.0 85 25.0 86 6.0 87 4.5 88 3.0 89 4.0 90 5.0 91 3.0 92 1.0 93 1.5 94 2.0 95 1.5 96 1.0 97 1.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1299411.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.00026378744351 #Duplication Level Percentage of deduplicated Percentage of total 1 73.42065647848878 26.43163000672869 2 10.104823643411654 7.27552633376831 3 3.512702769048747 3.7937467887791447 4 1.8810249175074623 2.708695728840912 5 1.359955080049122 2.447937081042112 6 1.0387498178011105 2.243716046999932 7 0.8680035076923718 2.1873848671746146 8 0.7417662726519152 2.136302518727815 9 0.6584567151115196 2.1334153892965424 >10 6.272539754523498 41.853212611429846 >50 0.10491533431982625 2.578491208384958 >100 0.032082531645257935 1.9460996287308605 >500 0.0027304280518601768 0.6612872153796214 >1k 0.0013652140259300884 1.0137607553001604 >5k 2.2753567098834806E-4 0.5887938194164151 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7188 0.553173707164246 No Hit CGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2749 0.21155739023295939 No Hit CCTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCCGTCTTCTGC 2573 0.19801279194958332 TruSeq Adapter, Index 20 (95% over 22bp) CTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCCGTCTTCTGCT 2369 0.18231337121203375 TruSeq Adapter, Index 23 (95% over 23bp) TCTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCCGTCTTCTGC 1782 0.13713905761918285 TruSeq Adapter, Index 20 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCCGTCTTCTGC 1500 0.11543691718786434 TruSeq Adapter, Index 20 (95% over 22bp) CGCTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCCGTCTTCTG 1403 0.10797199654304912 TruSeq Adapter, Index 23 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 7.695794479190956E-5 0.0 0.0 0.19100961897351953 0.0 2 7.695794479190956E-5 0.0 0.0 0.6738437645979601 0.0 3 7.695794479190956E-5 0.0 0.0 1.038932254690779 0.0 4 7.695794479190956E-5 0.0 0.0 1.4361122077618245 0.0 5 7.695794479190956E-5 0.0 0.0 2.117113061225432 0.0 6 7.695794479190956E-5 0.0 0.0 2.8182768962245204 0.0 7 7.695794479190956E-5 0.0 0.0 3.551224362422667 0.0 8 7.695794479190956E-5 0.0 0.0 4.665960192733477 0.0 9 7.695794479190956E-5 0.0 0.0 5.2475313815259375 0.0 10 7.695794479190956E-5 0.0 0.0 6.180569504183049 0.0 11 1.5391588958381912E-4 0.0 0.0 7.8912676589624065 0.0 12 1.5391588958381912E-4 0.0 0.0 9.245342697576056 0.0 13 1.5391588958381912E-4 0.0 0.0 9.757497820166213 0.0 14 1.5391588958381912E-4 0.0 0.0 9.941889055887629 0.0 15 1.5391588958381912E-4 0.0 0.0 10.191848460571752 0.0 16 1.5391588958381912E-4 0.0 0.0 10.765723854885021 0.0 17 1.5391588958381912E-4 0.0 0.0 11.601025387656408 0.0 18 1.5391588958381912E-4 0.0 0.0 12.465109191779968 0.0 19 1.5391588958381912E-4 0.0 0.0 13.084004983796504 0.0 20 1.5391588958381912E-4 0.0 0.0 13.704516892653672 0.0 21 1.5391588958381912E-4 0.0 0.0 14.625857407702412 0.0 22 1.5391588958381912E-4 0.0 0.0 15.63323690502851 0.0 23 1.5391588958381912E-4 0.0 0.0 16.671245664381786 0.0 24 1.5391588958381912E-4 0.0 0.0 17.4073484063164 0.0 25 1.5391588958381912E-4 0.0 0.0 18.057566081863243 0.0 26 1.5391588958381912E-4 0.0 0.0 18.649218761423445 0.0 27 1.5391588958381912E-4 0.0 0.0 19.211396548128345 0.0 28 1.5391588958381912E-4 0.0 0.0 19.81897952226047 0.0 29 1.5391588958381912E-4 0.0 0.0 20.4674271650771 0.0 30 1.5391588958381912E-4 0.0 0.0 21.172669771150158 0.0 31 2.308738343757287E-4 0.0 0.0 21.83727858237309 0.0 32 2.308738343757287E-4 0.0 0.0 22.460560977242768 0.0 33 2.308738343757287E-4 0.0 0.0 23.065681297141552 0.0 34 2.308738343757287E-4 0.0 0.0 23.645405495259006 0.0 35 2.308738343757287E-4 0.0 0.0 24.286388217430822 0.0 36 2.308738343757287E-4 0.0 0.0 24.906746210398403 0.0 37 2.308738343757287E-4 0.0 0.0 25.51956232477638 0.0 38 2.308738343757287E-4 0.0 0.0 26.12252782222099 0.0 39 2.308738343757287E-4 0.0 0.0 26.732958240310417 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATCGCG 20 7.0336263E-4 45.000004 1 CGTTTAT 1475 0.0 43.169495 1 CGTTTTT 3155 0.0 42.86054 1 CGTTAGG 375 0.0 42.600002 2 TAGGGAT 2240 0.0 42.589287 5 TTAGGGA 3700 0.0 42.26351 4 TCGTTAG 220 0.0 40.909092 1 TGTAGGG 1700 0.0 40.897057 3 TAGGGAA 1435 0.0 40.766552 5 TTTAGGG 5245 0.0 40.753098 3 CCGTAGG 100 0.0 40.499996 2 TTTTAGG 2905 0.0 40.430294 2 AGGGATC 935 0.0 40.427807 6 CTAGGGA 1765 0.0 40.410767 4 TAGGGAC 1465 0.0 40.392494 5 TAGGGCG 535 0.0 40.373833 5 AGGGATA 865 0.0 40.057804 6 CGTTCGG 90 0.0 40.0 2 TATTGCG 45 1.9286745E-8 40.0 1 TGCGTAG 90 0.0 40.0 1 >>END_MODULE