SRR2934286.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934286.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	932071
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGC	2810	0.30147917916124417	No Hit
CTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGCT	2630	0.28216734562066625	Illumina Single End Adapter 2 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGC	2246	0.24096876740076667	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2191	0.23506792937447898	No Hit
TCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGC	2173	0.2331367460204212	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1110	0.11908964016689716	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGTAT	30	2.1650576E-6	45.000004	18
ACTCGCC	30	2.1650576E-6	45.000004	40
GTCGACA	40	6.8121153E-9	45.0	32
ACGTCGA	40	6.8121153E-9	45.0	30
CATCGAA	25	3.8902363E-5	45.0	21
GGCGATA	40	6.8121153E-9	45.0	8
TTTAGGG	3440	0.0	41.664246	3
TTAGGGA	1830	0.0	41.434425	4
CTTTAGG	925	0.0	41.351353	2
TAGGGAT	980	0.0	41.09694	5
ACGGGTA	55	6.002665E-11	40.909092	5
TTTTAGG	1885	0.0	40.82228	2
CGTAGGG	355	0.0	40.56338	3
GCGTTAG	100	0.0	40.5	1
GATTCGT	50	1.0804797E-9	40.5	11
GTTAGGG	1445	0.0	40.48443	3
TAGGGGT	695	0.0	40.46763	5
CTAGGGA	990	0.0	40.454544	4
CTTAGGG	1460	0.0	40.376713	3
TAGGGAG	1020	0.0	40.14706	5