##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934282.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1511852 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.2384353759495 33.0 31.0 34.0 30.0 34.0 2 32.40261480621119 34.0 31.0 34.0 30.0 34.0 3 32.437449565169075 34.0 31.0 34.0 30.0 34.0 4 35.97514439244053 37.0 35.0 37.0 35.0 37.0 5 35.04925482123912 37.0 35.0 37.0 35.0 37.0 6 25.68221095715718 35.0 0.0 37.0 0.0 37.0 7 30.87061167362943 37.0 19.0 37.0 17.0 37.0 8 34.59266846225689 37.0 32.0 37.0 32.0 37.0 9 37.17163386363215 39.0 37.0 39.0 34.0 39.0 10 37.23422200056619 39.0 37.0 39.0 34.0 39.0 11 37.307994433317546 39.0 37.0 39.0 34.0 39.0 12 37.08118188817424 39.0 37.0 39.0 34.0 39.0 13 37.07454234938341 39.0 37.0 39.0 33.0 39.0 14 38.09702140156576 40.0 37.0 41.0 33.0 41.0 15 38.23691803165919 40.0 38.0 41.0 33.0 41.0 16 38.37757664109979 40.0 38.0 41.0 34.0 41.0 17 38.36482274720012 40.0 37.0 41.0 34.0 41.0 18 38.3378961697309 40.0 37.0 41.0 34.0 41.0 19 38.30784230202427 40.0 37.0 41.0 34.0 41.0 20 38.187449565169075 40.0 37.0 41.0 34.0 41.0 21 38.106534898918675 40.0 37.0 41.0 34.0 41.0 22 38.12856351018486 40.0 37.0 41.0 34.0 41.0 23 38.07268105608221 40.0 36.0 41.0 34.0 41.0 24 38.00091080343843 40.0 36.0 41.0 34.0 41.0 25 37.88825493500686 40.0 36.0 41.0 34.0 41.0 26 37.866375809272334 40.0 36.0 41.0 34.0 41.0 27 37.82762003159039 40.0 36.0 41.0 34.0 41.0 28 37.768164476417006 40.0 36.0 41.0 33.0 41.0 29 37.73741874204618 40.0 36.0 41.0 33.0 41.0 30 37.444480015239584 40.0 36.0 41.0 33.0 41.0 31 37.446350568706464 40.0 35.0 41.0 33.0 41.0 32 37.340287276796936 39.0 35.0 41.0 33.0 41.0 33 37.20837555527922 39.0 35.0 41.0 32.0 41.0 34 37.076793231083464 39.0 35.0 41.0 32.0 41.0 35 37.027524519595836 39.0 35.0 41.0 32.0 41.0 36 36.945173204784595 39.0 35.0 41.0 31.0 41.0 37 36.87183798414131 39.0 35.0 41.0 31.0 41.0 38 36.81334284043676 39.0 35.0 41.0 31.0 41.0 39 36.735283612417085 39.0 35.0 41.0 31.0 41.0 40 36.60625709394835 39.0 35.0 41.0 31.0 41.0 41 36.497792773366704 39.0 35.0 41.0 30.0 41.0 42 36.52821770914084 39.0 35.0 41.0 31.0 41.0 43 36.49712008847427 39.0 35.0 41.0 31.0 41.0 44 36.39945444395351 39.0 35.0 41.0 30.0 41.0 45 36.36363017014893 39.0 35.0 40.0 30.0 41.0 46 36.27083140413215 39.0 35.0 40.0 30.0 41.0 47 36.16580458933811 39.0 35.0 40.0 30.0 41.0 48 36.14751047060162 39.0 35.0 40.0 30.0 41.0 49 36.13201887486341 39.0 35.0 40.0 30.0 41.0 50 36.041235517762324 38.0 35.0 40.0 30.0 41.0 51 35.10212772149655 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 13.0 10 14.0 11 12.0 12 9.0 13 11.0 14 10.0 15 36.0 16 80.0 17 140.0 18 279.0 19 579.0 20 1007.0 21 1646.0 22 2677.0 23 4300.0 24 6844.0 25 10187.0 26 13464.0 27 15192.0 28 16007.0 29 18920.0 30 23255.0 31 30963.0 32 43486.0 33 68349.0 34 98980.0 35 119920.0 36 149182.0 37 244043.0 38 324223.0 39 317845.0 40 176.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.890364929900546 4.166479258551763 53.82458071292693 16.118575098620763 2 22.102163439278446 6.867669586705577 49.51926511325183 21.510901860764147 3 20.452994076139728 6.780425597214543 51.05261626138008 21.71396406526565 4 18.046938456938907 4.402878059492596 53.153681709585335 24.396501773983168 5 18.940478300786058 7.94919079380786 49.80262618298617 23.30770472241992 6 15.07574815524271 33.0348473263256 39.46881043911706 12.420594079314643 7 80.24654529676185 1.9179125999105735 13.15366848077722 4.681873622550356 8 81.29248101004596 3.7140540211608015 10.082666821884683 4.91079814690856 9 76.48685188761863 4.044906512013081 12.060307490415727 7.407934109952562 10 40.19434441995645 22.894172180874847 21.12336392715689 15.788119472011811 11 28.922540036987748 23.03102420078156 27.134203612522917 20.912232149707776 12 25.095181274357543 20.346766747009628 32.81835788159159 21.739694097041244 13 24.193108849278897 21.479748017663105 35.28718419527838 19.039958937779623 14 20.764929371393496 23.61626667160542 34.79923960810979 20.81956434889129 15 18.093570005529642 23.150811058225276 37.524374078944234 21.231244857300847 16 21.100015080841246 23.508253453380355 32.03931337194382 23.352418093834583 17 21.90492191034572 24.43493146154518 30.451724110561084 23.208422517548012 18 22.528726356812705 23.28455430822594 32.22630257459064 21.960416760370723 19 22.216328053275056 26.243507962419603 29.43667766421581 22.103486320089534 20 22.261636721054707 27.12877980119747 31.2908274090321 19.31875606871572 21 22.496580353103347 27.485494611906457 31.2439974283197 18.773927606670494 22 21.155311498744584 22.823530345562926 32.27915166299346 23.742006492699023 23 20.324542349383407 25.683797091249673 30.752547207001747 23.23911335236518 24 21.181901403047387 24.627146043395783 30.45384071985882 23.73711183369801 25 20.75844725541918 27.350626913216374 27.489992406664143 24.400933424700302 26 19.592460108529142 25.557660405912745 29.24175117670248 25.608128308855626 27 20.04607593865008 25.535171432124308 30.430028865259295 23.988723763966313 28 17.54880768752497 24.646195527075403 31.234604974561 26.57039181083863 29 19.24407944692999 24.02192807232454 29.962192066419203 26.77180041432627 30 20.854223826141713 26.55683228252501 29.455197995570998 23.133745895762285 31 20.774586401314416 26.36031833803838 27.820381889232543 25.044713371414662 32 21.014556980445175 26.698049809108298 27.07877490653847 25.208618303908054 33 20.59348401827692 26.46621494696571 26.44776075965108 26.49254027510629 34 18.398427888444107 26.106722086553447 28.71749351126962 26.777356513732826 35 17.308506388191436 27.12143781269595 27.19214579204843 28.377910007064184 36 19.49383934406278 28.16155285041128 24.613123506798285 27.731484298727654 37 17.770257935300545 29.0031034783828 27.929453412106476 25.297185174210174 38 18.60698004831161 27.030225180771662 27.78969105441538 26.57310371650135 39 19.206509631895187 26.25342956850274 28.79812309670523 25.741937702896845 40 20.618817185809192 26.689384939795698 28.054201072591763 24.63759680180335 41 17.923645965345813 26.51628598566526 26.14343202906105 29.41663601992788 42 18.427465122247416 23.7135645552607 28.61424266396446 29.24472765852742 43 19.182763921336214 23.703907525339783 28.872535142328747 28.24079341099526 44 19.966967666147216 23.542714498509113 28.36977429007601 28.120543545267658 45 19.525456195447703 23.67744990911809 27.049010088289066 29.748083807145143 46 20.529192010858203 25.132288081108467 27.682140844474194 26.656379063559132 47 16.548643650304395 25.28772657641092 31.420734304680614 26.742895468604072 48 17.584723901545917 26.19158489058453 29.28983789418541 26.933853313684143 49 19.53650225022026 23.442903141312772 30.80413955863405 26.21645504983292 50 18.81791339363906 23.65013242036919 28.997150514732922 28.534803671258828 51 17.407987025185005 23.841222553530372 26.566886176689252 32.18390424459537 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 163.0 1 750.5 2 1338.0 3 9097.0 4 16856.0 5 10812.5 6 4769.0 7 4655.5 8 4542.0 9 4749.0 10 4956.0 11 4972.0 12 4988.0 13 4982.0 14 4976.0 15 4817.5 16 4659.0 17 4608.0 18 4557.0 19 4526.0 20 4495.0 21 4833.0 22 5171.0 23 5673.0 24 6175.0 25 6954.5 26 9350.5 27 10967.0 28 13368.0 29 15769.0 30 17646.0 31 19523.0 32 23558.5 33 27594.0 34 31636.0 35 35678.0 36 39146.0 37 42614.0 38 46575.5 39 50537.0 40 57538.5 41 64540.0 42 73879.5 43 83219.0 44 95470.0 45 107721.0 46 140058.0 47 172395.0 48 175372.5 49 178350.0 50 169865.0 51 161380.0 52 138527.0 53 115674.0 54 101180.0 55 86686.0 56 77950.5 57 69215.0 58 62913.5 59 56612.0 60 49688.5 61 42765.0 62 37033.0 63 31301.0 64 26620.0 65 21939.0 66 17993.0 67 14047.0 68 11819.5 69 9592.0 70 8413.0 71 7234.0 72 6103.0 73 4972.0 74 3986.0 75 2254.0 76 1508.0 77 1232.5 78 957.0 79 661.0 80 365.0 81 259.0 82 153.0 83 125.0 84 97.0 85 66.0 86 35.0 87 29.0 88 23.0 89 14.0 90 5.0 91 4.5 92 4.0 93 3.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1511852.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.83154109635538 #Duplication Level Percentage of deduplicated Percentage of total 1 73.7906711521085 28.654054793707466 2 11.37421328779656 8.833564614475671 3 4.107251592723943 4.7847272704779265 4 2.0624339115973003 3.203499487868302 5 1.2450348133645839 2.4173310260779997 6 0.8794705738285555 2.0490718638395284 7 0.7236657835811837 1.967074033061127 8 0.5602672432571287 1.7404832385184743 9 0.5044622691950869 1.7630142604028736 >10 4.590061906630651 32.54363511838703 >50 0.10298428307506016 2.752044827717073 >100 0.05268510930920995 3.6545802138051102 >500 0.002643695262546151 0.7348900750608233 >1k 0.003399036766130766 2.7041784262715067 >5k 7.553415035846146E-4 2.197850750329082 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGC 8558 0.5660606990631358 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7775 0.5142699153091704 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCG 7478 0.4946251352645629 No Hit GAATCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTTC 6162 0.40757957789519084 RNA PCR Primer, Index 29 (95% over 22bp) CTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTTCTGCT 3945 0.26093823998645366 RNA PCR Primer, Index 29 (96% over 26bp) GCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTTCTGC 3615 0.2391107066035564 Illumina PCR Primer Index 8 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTTCTGC 3512 0.23229787042647032 RNA PCR Primer, Index 29 (96% over 25bp) CGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3046 0.20147474752819722 No Hit TCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTTCTGC 2959 0.19572021599997885 Illumina PCR Primer Index 8 (95% over 22bp) GAATCAGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTTC 2267 0.14994853993644883 RNA PCR Primer, Index 29 (95% over 22bp) GAATGATCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTC 2044 0.13519841889285458 No Hit GAATGACTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCT 2043 0.13513227485230037 No Hit CGCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTTCTG 1963 0.12984075160796163 RNA PCR Primer, Index 29 (95% over 24bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.614404055423415E-5 0.0 0.0 0.2776065382061207 0.0 2 6.614404055423415E-5 0.0 0.0 1.0065800091543353 0.0 3 6.614404055423415E-5 0.0 0.0 1.4697205811150826 0.0 4 6.614404055423415E-5 0.0 0.0 2.080494651592881 0.0 5 6.614404055423415E-5 0.0 0.0 3.427650325560968 0.0 6 6.614404055423415E-5 0.0 0.0 4.298965771781894 0.0 7 6.614404055423415E-5 0.0 0.0 5.424605053933851 0.0 8 6.614404055423415E-5 0.0 0.0 7.014575500776531 0.0 9 6.614404055423415E-5 0.0 0.0 7.732899781195514 0.0 10 1.322880811084683E-4 0.0 0.0 9.515613962213232 0.0 11 1.9843212166270244E-4 0.0 0.0 11.784156121101802 0.0 12 1.9843212166270244E-4 0.0 0.0 14.283937845767973 0.0 13 1.9843212166270244E-4 0.0 0.0 14.990819207171072 0.0 14 1.9843212166270244E-4 0.0 0.0 15.28509404359686 0.0 15 1.9843212166270244E-4 0.0 0.0 15.7246873371203 0.0 16 1.9843212166270244E-4 0.0 0.0 16.481705881263508 0.0 17 1.9843212166270244E-4 0.0 0.0 17.515008082801756 0.0 18 1.9843212166270244E-4 0.0 0.0 18.582242177144323 0.0 19 1.9843212166270244E-4 0.0 0.0 19.48854782081844 0.0 20 2.645761622169366E-4 0.0 0.0 20.322227307964006 0.0 21 2.645761622169366E-4 0.0 0.0 21.52346922846945 0.0 22 2.645761622169366E-4 0.0 0.0 22.817577381913043 0.0 23 2.645761622169366E-4 0.0 0.0 24.10321909816569 0.0 24 2.645761622169366E-4 0.0 0.0 25.039091127967552 0.0 25 2.645761622169366E-4 0.0 0.0 25.8748210803703 0.0 26 2.645761622169366E-4 0.0 0.0 26.59215320018097 0.0 27 2.645761622169366E-4 0.0 0.0 27.370800845585414 0.0 28 2.645761622169366E-4 0.0 0.0 28.152491116855355 0.0 29 2.645761622169366E-4 0.0 0.0 28.964806078901905 0.0 30 2.645761622169366E-4 0.0 0.0 29.89174866322894 0.0 31 2.645761622169366E-4 0.0 0.0 30.69235613009739 0.0 32 2.645761622169366E-4 0.0 0.0 31.464720091649184 0.0 33 2.645761622169366E-4 0.0 0.0 32.23060193722666 0.0 34 3.3072020277117074E-4 0.0 0.0 32.99760823149356 0.0 35 3.968642433254049E-4 0.0 0.0 33.85543029344142 0.0 36 3.968642433254049E-4 0.0 0.0 34.60662816201586 0.0 37 3.968642433254049E-4 0.0 0.0 35.373899032444974 0.0 38 3.968642433254049E-4 0.0 0.0 36.182311496098826 0.0 39 3.968642433254049E-4 0.0 0.0 37.37184592142617 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTAAGA 20 7.0339936E-4 45.0 40 CGTTTAT 1415 0.0 43.091873 1 TCGTTAG 200 0.0 42.75 1 CGTTTTT 3860 0.0 42.493523 1 CGTTAGG 445 0.0 42.471912 2 CCGTTAG 70 0.0 41.785717 1 TTAGGGA 2800 0.0 41.625 4 GTAGGGA 765 0.0 41.47059 4 TTTAGGG 5080 0.0 41.32382 3 GCGTTAG 170 0.0 41.02941 1 CGTAGGG 620 0.0 40.645164 3 TAGGGAA 1225 0.0 40.59184 5 TCTCGCG 100 0.0 40.5 1 CTTAGGG 2760 0.0 40.43478 3 TCTCGAG 145 0.0 40.344826 1 TTAGGGG 5010 0.0 40.32934 4 TAGGGTA 620 0.0 40.28226 5 TAGGGAT 1565 0.0 40.255592 5 AGGGCGA 750 0.0 40.199997 6 GTTAGGG 2285 0.0 40.076584 3 >>END_MODULE