SRR2934281.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934281.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	552951
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTGCT	2569	0.4645981289481346	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTGC	2561	0.46315134614097814	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2041	0.3691104636758049	No Hit
GCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTGC	1956	0.353738396349767	No Hit
TCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTGC	1942	0.3512065264372431	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGC	1083	0.19585822251881269	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCG	992	0.17940106808740738	No Hit
CTGTCACTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTGCT	793	0.14341234575938916	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	758	0.13708267097807944	No Hit
GCTGTATCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTGC	748	0.1352741924691338	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTC	743	0.13436995321466097	No Hit
TCCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTG	741	0.13400825751287185	No Hit
CCTGTATCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTGC	721	0.13039130049498057	No Hit
TCTGTATCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTGC	660	0.11935958159041218	No Hit
CGCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTG	620	0.11212566755462962	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAG	65	0.0	45.000004	1
CGTTCAT	50	2.1827873E-11	45.000004	17
CGGTGTA	25	3.88817E-5	45.000004	13
TAGTCCG	25	3.88817E-5	45.000004	1
CTCACGC	20	7.030107E-4	45.0	19
GTTTACG	20	7.030107E-4	45.0	1
CCGTCCC	20	7.030107E-4	45.0	13
TATTGCG	20	7.030107E-4	45.0	1
CGAATAT	35	1.2103919E-7	45.0	14
GTCCATT	20	7.030107E-4	45.0	22
ACTCACG	20	7.030107E-4	45.0	18
TCGACGT	45	3.8380676E-10	45.0	26
CGTTTAT	335	0.0	45.0	1
TAGCTAT	20	7.030107E-4	45.0	23
TTCGACG	45	3.8380676E-10	45.0	25
CCGCACA	20	7.030107E-4	45.0	13
TCGCGAG	20	7.030107E-4	45.0	1
CGGGTAC	30	2.1634514E-6	44.999996	6
TAGGTTC	30	2.1634514E-6	44.999996	5
TACGCAC	30	2.1634514E-6	44.999996	19